BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950690
Length=760
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59470.1 | Symbols: | Mannose-P-dolichol utilization defect... 1199 0.0
AT4G07390.1 | Symbols: | Mannose-P-dolichol utilization defect... 623 8e-178
> AT5G59470.1 | Symbols: | Mannose-P-dolichol utilization defect
1 protein | chr5:23978556-23979478 FORWARD LENGTH=839
Length=839
Score = 1199 bits (649), Expect = 0.0
Identities = 722/758 (95%), Gaps = 2/758 (0%)
Strand=Plus/Plus
Query 1 CAACTTCAGGAAATAAAACAATGGATTATCTAGGAATTGATTTGAGCTGCGCAATCGGAA 60
|||||| ||| | ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 38 CAACTTGAGG--AGAAAACAATGGATTATCTAGGAATCGACTTGAGCTGCGCAATCGGAT 95
Query 61 CTCTCCGTAACGGTGAGTTTCCGGCGAAAGATTGTCTTCTTCCTCTCATTTCAAAGCTGC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 96 CTCTCCGTAACGGTGAGTTTCCGGCGAAAGATTGTCTTCTTCCTCTCATTTCAAAGCTAC 155
Query 121 TCGGTTACTTCCTCGTCGCTGCTTCAATGACCGTCAAGCTTCCTCAGATAATGAAAATCG 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 156 TCGGTTACTTCCTCGTCGCTGCTTCAATGACCGTTAAGCTTCCTCAGATAATGAAAATCG 215
Query 181 TGGACAACAAGAGTGTAAAAGGCTTAAGTGTTGTAGCATTTGAGCTTGAAGTGGTTGGTT 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 216 TGGACAACAAGAGTGTAAAAGGCCTAAGTGTTGTAGCATTTGAGCTTGAAGTGATTGGTT 275
Query 241 ACACAATCGCACTTGCTTATTGTCTTAACAAAAAGCTTCATTTTTCAGCTTTTGGTGAAT 300
|||||||| |||||||||| |||||||||||| | |||| ||||||||||||||||||||
Sbjct 276 ACACAATCTCACTTGCTTACTGTCTTAACAAAGACCTTCCTTTTTCAGCTTTTGGTGAAT 335
Query 301 TAGCTTTTCTTTTGATCCAAGCTTTAATCTTGGTGGCTTGTATCTATTATTTCTCTCAAC 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 336 TAGCTTTTCTTTTGATCCAAGCTTTAATCTTGGTGGCTTGTATCTACTATTTCTCACAAC 395
Query 361 CTCTCTCTGTAACAACTTGGGTCAAAGCAATTCTTTACTTTGCTTTAGCACCAACTGTGT 420
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 396 CTCTCTCTGTAACAACTTGGGTCAAAGCAATTCTTTATTTTGCTATAGCACCAACTGTGT 455
Query 421 TTGCTGGTAAGATTGATCCTTTGCTTTTCGAAGCTCTTTATGCTTCTAAGCATTTGATAT 480
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 456 TTGCTGGTAAGATTGATCCTTTTCTTTTTGAAGCTCTTTATGCTTCTAAGCATTTGATAT 515
Query 481 TTCTCTCTGCAAGAATCCCTCAGATTTGGAAGAATTTCAGAAACAAAAGCACTGGACAAC 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 516 TTCTCTCTGCAAGAATCCCTCAGATTTGGAAGAACTTCAGAAACAAAAGCACTGGACAAC 575
Query 541 TTAGTTTCTTGACTTGTCTCATGAACTTTGGTGGAGCTATGGCGAGAGTTTTCACCAGCA 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 576 TTAGTTTCTTGACTTGTCTCATGAACTTTGGTGGAGCTTTGGCGAGAGTTTTCACCAGCA 635
Query 601 TTCAAGAGAAGGCTCCCCTTAGCATGCTTATGGGTATTGTTCTTGCAATCTTCACCAATG 660
|||||||||||||||| |||||||||||| |||||||||||||| | |||||||||||||
Sbjct 636 TTCAAGAGAAGGCTCCACTTAGCATGCTTTTGGGTATTGTTCTTTCTATCTTCACCAATG 695
Query 661 GAATCATTATGAGTCAGATGCTTTTGTATCGAAGCAAAGGAAAGGAAGATAAGCAAGTGA 720
||||||||||||||||||| ||||||||| ||||||||||||| |||||||||| |||||
Sbjct 696 GAATCATTATGAGTCAGATTCTTTTGTATAGAAGCAAAGGAAACGAAGATAAGCTAGTGA 755
Query 721 AAGGTATTAAGATTTCATGATATATTGTAAAAGAGATT 758
|| ||| ||||||||||||||||||||||||| ||||
Sbjct 756 AAAGTAAAAAGATTTCATGATATATTGTAAAAGTGATT 793
> AT4G07390.1 | Symbols: | Mannose-P-dolichol utilization defect
1 protein | chr4:4195680-4197571 FORWARD LENGTH=1032
Length=1032
Score = 623 bits (337), Expect = 8e-178
Identities = 583/698 (84%), Gaps = 32/698 (5%)
Strand=Plus/Plus
Query 15 AAAA-CAATGGATTATCTAGGAATTGATTTGAGCTGCGCAATCGGAACTCTCCGTAACGG 73
|||| ||||||||||||| ||||| || |||||||||| |||||| ||||||| |||||
Sbjct 64 AAAATCAATGGATTATCTCGGAATCGACATGAGCTGCGCGATCGGATCTCTCCGGAACGG 123
Query 74 TGAGTTTCCGGCGAAAGATTGTCTTCTTCCTCTCATTTCAAAGCTGCTCGGTTACTT-CC 132
||| || |||| ||||||||||||||||||||| ||||||||||| |||||||| || ||
Sbjct 124 TGACTTCCCGGAGAAAGATTGTCTTCTTCCTCTAATTTCAAAGCTTCTCGGTTA-TTGCC 182
Query 133 TCGTCGCTGCTTCAATGACCGTCAAGCTTCCTCAGATAATGAAAATCG-TGGACAACAAG 191
|||| ||||||||||| ||||||||||| ||||||||||||||||||| | || | |||
Sbjct 183 TCGTTGCTGCTTCAATCACCGTCAAGCTCCCTCAGATAATGAAAATCGTTCAAC-ATAAG 241
Query 192 AGTGTAAAAGGCTTAAGTGTTGTAGCATTTGAGCTTGAAGTGGTTGGTTACACAATCGCA 251
|||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 242 AGTGTACGAGGCTTAAGTGTTGTGGCATTTGAGCTTGAAGTTGTTGGTTACACAATTTCA 301
Query 252 CTTGCTTATTGTCTTAACA-AAAAG-CTTCATTTTTCAGCTTTTGGTGAATTAGCTTTTC 309
|||||||||||| || || ||| | |||| ||||| ||||| || ||| | |||||||
Sbjct 302 CTTGCTTATTGT-TT-GCATAAAGGTCTTCCCTTTTCGGCTTTCGGCGAAATGGCTTTTC 359
Query 310 TTTTGATCCAAGCTTTAATCTTGGTGGCTTGTATCTATTATT-TCTCTCAACCTCT-CTC 367
|||||||||||||||||||||||||||||||||||||||||| | || ||||| | | |
Sbjct 360 TTTTGATCCAAGCTTTAATCTTGGTGGCTTGTATCTATTATTAT-TCACAACCAGTAC-C 417
Query 368 TGTAACAACTTGGGTCAAAGCAATTCTTTACTTT-GCTTTAGCACCAACTGTGTTTGCTG 426
||| ||||||||| | | | || |||| || || ||| | || ||||||||| ||||||
Sbjct 418 TGTCACAACTTGGATTAGACCACTTCTATA-TTGCGCTGTGGCGCCAACTGTGCTTGCTG 476
Query 427 GTA-AGATTGATCCTTTGCTTTTCGAAGCTCTTTATGCTTCT-AAGCATTTGATATTTCT 484
| | ||||| |||| |||||||||||||||||||||||| || ||| |||||||||
Sbjct 477 G-ACAGATTAATCCGACGCTTTTCGAAGCTCTTTATGCTTCACAA-CATGCGATATTTCT 534
Query 485 CTCTGCAAGAATCCCTCAGATTTGGAAGAA-TTTCAGAAACAAAAGCACTGGACAACTTA 543
|| ||||||| |||||||||| |||||||| ||| | |||||||||||||||| ||||||
Sbjct 535 CTTTGCAAGACTCCCTCAGATATGGAAGAACTTTAA-AAACAAAAGCACTGGAGAACTTA 593
Query 544 GTTTCTTGACTTGTCT-CATGAACTTTGGTGGAG-CTATGGCGAGAGTTTTCACCAGCAT 601
||||||| |||| ||| ||||||||||| || | | || | |||||||||||||||| |
Sbjct 594 GTTTCTTAACTT-TCTTCATGAACTTTGCCGG-GTCAATAGTGAGAGTTTTCACCAGC-T 650
Query 602 T-CAAGAGAAGGCTCCCCTTAGCATGCTTATGGGTATT-GTTCTTGCAATCTTCACCAAT 659
| || || || ||||| ||||||| |||| |||| || | ||||| | || |||||||
Sbjct 651 TACAGGAAAAAGCTCCAATTAGCATTCTTACGGGT-TTCGCTCTTGGAGTCGTCACCAAC 709
Query 660 GGAATCATTATGA-GTCAGATGCTTTTGTA-TCGAAGC 695
|||| ||| ||| | ||||| || ||||| |||||||
Sbjct 710 GGAAGCATCCTGACG-CAGATTCTCTTGTACTCGAAGC 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36922098045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5