BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950692
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59490.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 795 0.0
> AT5G59490.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr5:23982724-23984617 REVERSE
LENGTH=1089
Length=1089
Score = 795 bits (430), Expect = 0.0
Identities = 602/684 (88%), Gaps = 16/684 (2%)
Strand=Plus/Plus
Query 254 AAAGCTTGGAATAGAGGAAGACAAAGTTGTTGAACTAAACCAACTTCTCTAT-AGAAAAT 312
||||||||||||||| ||||| ||| ||||||||||||||| |||| ||| || ||||
Sbjct 219 AAAGCTTGGAATAGATGAAGATGGAGTCGTTGAACTAAACCAAATTCTTTATAAG-AAAT 277
Query 313 ATGGAACTTCAATGGCTGGCCTTAAGGCTATAGGTTATGAATTCGATAATGACGAGTACC 372
|||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 278 ATGGAACTTCAATGGCCGGTCTTAAGGCGGTAGGTTATGAATTCGATAATGACGAGTACC 337
Query 373 ATAGCTATGTTCATGGGAGGTTACCCTATGAAAACCTTAAACCGGACCCGGTTCTCAGAA 432
| | ||||||||||| || ||||| ||||||||||||||||||||||||||||| || |
Sbjct 338 ACCGGTATGTTCATGGTAGATTACCTTATGAAAACCTTAAACCGGACCCGGTTCTAAGGA 397
Query 433 ATCTACTTCTTAGCCTACCTTTTCGAAAATTGGTTTTCTCAAATGGAGATGATGTTCATG 492
||| || ||| | |||||||| ||||||||||| ||||| ||||||||||| |||||||
Sbjct 398 GTCTCCTCCTTGGTCTACCTTTGCGAAAATTGGTATTCTCGAATGGAGATGAGGTTCATG 457
Query 493 TGGTGAAAGCTCT-AAAGAGACTCGGCATTGAAGACTGTTTTGAGAGAATCATAAGTTTC 551
|| |||| ||||| | | ||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 458 TGATGAAGGCTCTCACA-AGACTTGGCATCGAAGATTGTTTTGAGAGAATCATAAGTTTC 516
Query 552 GAGACCTTAAACCCTAAGACCAACGAGGCTGAAG-TTTCTTGCGTCACAGGTCATCTTTC 610
||||||||||||||| | | |||||| |||| || ||||||||||||||||||||||| |
Sbjct 517 GAGACCTTAAACCCTGATATCAACGAAGCTG-AGCTTTCTTGCGTCACAGGTCATCTTCC 575
Query 611 CGAAAATCTGGTTATCTGTAAACCAACCGAGATTGCTTTCGAGAAAGCCTTCGATATTGC 670
||| |||| |||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 576 CGAGAATCCGGTTATTTGTAAACCAACTGAGATTGCTTTCGAGAAAGCCTTCGACATTGC 635
Query 671 ACAGCTCAATCCTCACAAATCCTTGTTCTTTGACGACAGTATCCGGAACATCCAAACCGG 730
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 636 ACAGCTCAATCCTCACAAAACCTTGTTCTTTGACGACAGTACCCGGAACATCCAAACCGG 695
Query 731 AAAAGTCATGGGTCTCCATACAGTCTTGGTTGGTAAATCA-AGAAAAGTGGATGGGAGTG 789
|||| | | |||||||||||||||||||||||||||||| |||||| | ||||| || |
Sbjct 696 GAAAGCCGTTGGTCTCCATACAGTCTTGGTTGGTAAATCAGAGAAAA-TAGATGGAAGCG 754
Query 790 ATTACGCGTTAGAAAGCATTCACAACATGAAAGAAGCATTTCCGGAGTTATGGTTAGAAT 849
|||||||||||||||||||||||||||||||||| ||||| || |||||||||| ||||
Sbjct 755 ATTACGCGTTAGAAAGCATTCACAACATGAAAGAGGCATTCCCCGAGTTATGGTCGGAAT 814
Query 850 CCAACAGCAACAACAACAACGAGAAATCTAAAAGAATT-AGTTACGCTGCACAGTTCTCG 908
||| | ||||||||| | || || || |||||||| | ||||||| ||||| |||||
Sbjct 815 CCATTATCAACAACAA-A--GA-AA--CTGAAAGAATTGA-TTACGCTTCACAGATCTCG 867
Query 909 ATTGCAACTTCTGTTGAAGCTTAA 932
|||| |||||||||| ||||||||
Sbjct 868 ATTGAAACTTCTGTTCAAGCTTAA 891
Score = 158 bits (85), Expect = 1e-37
Identities = 104/113 (92%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 79 AAACGGAATTTGTGACCAACTC-CACACCAAGATATGAATGTCTCCTCTTTGATTTGGAT 137
||| ||||||||||| || ||| | |||||||||||||||||||||||||||||||||||
Sbjct 89 AAATGGAATTTGTGAACAGCTCTC-CACCAAGATATGAATGTCTCCTCTTTGATTTGGAT 147
Query 138 GATACTCTATATCCTTTAAGCTCTGGTTTATCAGAAGCATGCGCCAACAACAT 190
|||||||| ||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 148 GATACTCTTTATCCTTTAAGCTCTGGCTTATCAGATGCATGCTCCAACAACAT 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5