BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950700
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59560.1 | Symbols: SRR1 | sensitivity to red light reduced ... 1301 0.0
> AT5G59560.1 | Symbols: SRR1 | sensitivity to red light reduced
protein (SRR1) | chr5:24000556-24001931 REVERSE LENGTH=1260
Length=1260
Score = 1301 bits (704), Expect = 0.0
Identities = 822/879 (94%), Gaps = 8/879 (1%)
Strand=Plus/Plus
Query 1 CCAGTTTCTTGTCGAAGCTTCAATGGAAGA-AACGGTTAAAAACTCAAGCAGTGATGGTG 59
|||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 220 CCAGTTTCTTGTGGAAGCTTCAATGGAA-ACGACTGTTAAAAACTCAAGCAGTGATGGTG 278
Query 60 AGTGGACAGTGGTTTTACCTAGTAAAGGAAGACAAGGAAGAAGGAA-AAAACCGAAACCT 118
|||||| ||| || |||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 279 AGTGGAAAGTAGTCTTACCTAGTAAAGGAAGACAAGGAAGAA-GAAGAAAACCGAAACCT 337
Query 119 AAAGGTCCAGCAGAAGACGAAGAGCAACCATGGAAATCTGATGATCTTGAAATTGATCCG 178
||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 338 AAAGGTCAAGCAGAAGAAGAAGAGCAACCATGGAAATCAGATGATCTTGAAATTGATCCA 397
Query 179 GAGAGACAAGCAAGACTAAAGCAGAAGATGGAAATCTCTTTGAAGAAAATCGAGAGCTCG 238
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 398 CAGAGACAAGCAAGACTAAAGCAGAAGATGGAAATCTCTCTGAAGAAAATCGAAAGCTCG 457
Query 239 AAG-TTTTACGCAGCATTCTTAGAGCAGCTTAAGTCTCCTGAGGTTTCAG-ACCAGATTC 296
|| |||||| |||||||||| |||||||||||||||||||||||||| | | |||||||
Sbjct 458 -AGTTTTTACACAGCATTCTTGGAGCAGCTTAAGTCTCCTGAGGTTTC-GAATCAGATTC 515
Query 297 GACTCGTGTTAGGCAATGAAACACAGTTGCAGATGGTGATGTATGGTATAGGCAGCATTG 356
| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 516 GCCTCGTGTTAGGGTCTGAAACACAGTTGCAGATGGTGATGTACGGTATAGGTAGCATTG 575
Query 357 AGTCTTATGAATCTCCGAGGTTTCAGCTGAGCATTGCAATCTTGATGAAGAGAGAGTTTG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 AGTCTTATGAATCTCCGAGGTTTCAGCTGAGCATTGCAATCTTGATGAAGAGAGAGTTTG 635
Query 417 ATTGGGTTGGTGATAACATTGAAGTGTTTGATCCAGTTCTCTCTGCAACTGAATCTTGTT 476
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 636 ATTGGGTTGGTGATAACATTGAAGTGTTTGACCCAGTTCTCTCTGCAACTGAATCTAGTT 695
Query 477 TCTTAGAATCTTTGGGATGCACTGTTCTATCTGTGAATGAGCAAGCTCGTCGAGAAGCTT 536
| |||||||||||||||||| |||||||||||||||||||||||||||| | |||||||
Sbjct 696 ACCTAGAATCTTTGGGATGCAGTGTTCTATCTGTGAATGAGCAAGCTCGTAGGGAAGCTT 755
Query 537 TAAGGCCTACTCTTTTCTTTATGCCACACTGTGAGGCCAATTTATACGGCAACCTATTGG 596
||| ||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||
Sbjct 756 TAAAGCCTACTCTTTTCTTCATGCCACACTGTGAGGCCAATCTATACAGCAACCTATTGC 815
Query 597 AAGCAAATTGGAGAATGGATCGATTGTCTAGAATCGCATTGTTTGGGAACAGCTTTCAGA 656
||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||
Sbjct 816 AAGCAAATTGGAGAATGGATCGACTGTCGAAAATCGCATTGTTTGGGAACAGCTTTCAGA 875
Query 657 TGTATGAGGAGCAAGTTTCGTTTGACCCAGAAGTCATCTGTGCCACCAAACGAATCATAG 716
||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||
Sbjct 876 TGTATGAGGAGCAAGTTTCATTTGACGCAGAAGTCATCTGTGCTACCAAACGAATCATAG 935
Query 717 CTGCACAAAGTGTCACAAGCGAGTTTGCTATTGAGACGGTATCAGAAGATTATTTTGCAG 776
|||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 936 CTGCACAAAGAGTCACAAGCGAGTTTGCTATTGAGACGGAATCAGATGATTATTTTGCAG 995
Query 777 CATTCCATGATTCAAGCTGGCATTTTTTCAGTTCTGGTATAGATTCAGAGCTGCCATTGT 836
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 996 CATTCCATGATTCAAGCTGGCATTTTTTCAGTTCTGGTATAGATTCGGAGCTGCCATTGT 1055
Query 837 TGGTTTCAGAGGACTTTTAGATCCTTGTTTTCAAAAGCT 875
| |||||||| | ||||||||| |||||||||||||||
Sbjct 1056 TCGTTTCAGACTAATTTTAGATCATTGTTTTCAAAAGCT 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42799493244
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5