BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950719
Length=1961
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59730.1 | Symbols: ATEXO70H7, EXO70H7 | exocyst subunit exo... 2765 0.0
AT5G59732.1 | Symbols: | other RNA | chr5:24064478-24066154 FO... 1229 0.0
> AT5G59730.1 | Symbols: ATEXO70H7, EXO70H7 | exocyst subunit exo70
family protein H7 | chr5:24063877-24066170 REVERSE LENGTH=2294
Length=2294
Score = 2765 bits (1497), Expect = 0.0
Identities = 1760/1887 (93%), Gaps = 17/1887 (1%)
Strand=Plus/Plus
Query 1 aaaaa-aaaaacaga-aaaagccacaaaaaTGGGGAAGCACTTATTCCGATCATCTCCAC 58
||||| ||||||||| ||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 139 AAAAATAAAAACAGAGCAAA-CCACAAAAATGGGGAAGCATTTATTCCGATCATCTCCTC 197
Query 59 CGCCGGAGAAACCAACAGCTCATCTCTCTCTCGCGGAATCAGCTGTTCAAGAATGTATGA 118
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CACCGGAGAAACCAACAGCTCATCTCTCTCTCGCGGAATCAGCTGTTCAAGAATGTATGA 257
Query 119 GCAACATCAACGCTGTCATATCAAAATGGACTTCTCCGGCTGCTTCTTCCTCCGACGAGT 178
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 258 GCAACATCAACACCGTCATATCAAAATGGACTTCTCCGGCTGCTTCTTCCTCCGACGACT 317
Query 179 TCCTCTTCTCCACCAACAGCCGTCGTGAAGCAGAGGAGTTTGTGACTGCCGTTAGACATT 238
||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 318 TCCTCTTCTCCACCAACAGTCGTCGTGAAGCAGAGGAGTTTGTTACAGCCGTTAGACATC 377
Query 239 TACAGAGCACCATGCATCGTTTGGTTTCCGTGAATCCTTCGTCGGAGAAGCTAATCTACG 298
|||| ||||| |||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 378 TACAAAGCACGATGCATCGTTTGGTTTCCGTTAACCCTTCCTCGGAGAAGCTAATCTACG 437
Query 299 CGCAGAATCTTATGCAATCGGCGATGAGGCTTCTTGAATCAGAGTTTTATCGTGTCTTGA 358
| |||||||| |||||||||||||||| |||||| |||||||||||| ||||||| || |
Sbjct 438 CACAGAATCTAATGCAATCGGCGATGAAGCTTCTCGAATCAGAGTTTCATCGTGTTTTAA 497
Query 359 AAGCAAACCGTGAGTATTTAGATCCGGAATCCGTCTCTGTACGTTCTTACAGATCTTCAA 418
|||| |||||||||||||||||||| |||| ||||||||||||||||||||||| || |
Sbjct 498 AAGCGAACCGTGAGTATTTAGATCCTGAATGTGTCTCTGTACGTTCTTACAGATCATCGA 557
Query 419 GATTCAGTTCTTCGACTACGACCAGTGTTTCCGATTCAGAAGACGAAATCACTTACGAAG 478
|||||||| ||||||||||||| ||||| |||||||| |||||||||| || ||||||||
Sbjct 558 GATTCAGTACTTCGACTACGACTAGTGTCTCCGATTCCGAAGACGAAAGCAGTTACGAAG 617
Query 479 AAAACGCCGACGAAGAGCATAGATTCTCCGGTGGAGATTCCGACGCCATGGATGATCTCA 538
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 618 AAAACGCCGACGAAGAGCATAGATTCTCCGGTGGAGATTCCGACGCAATGGATGATCTCA 677
Query 539 AGATGATTGCTGATTGTATGATCTCAACTGGTTACGCTAAAGAATGCGTTAGGGTTTATA 598
||||||||||||||||||||||||| || || |||||||| |||||||||||||||||||
Sbjct 678 AGATGATTGCTGATTGTATGATCTCTACCGGCTACGCTAAGGAATGCGTTAGGGTTTATA 737
Query 599 AAACCGTACGGAAATCGATTGTTGATGAGACTCTGCATAATCTGGGAATGGAGAGATTCA 658
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 738 AAACCGTACGGAAATCGATTGTTGATGAGACGCTGCATAATCTGCAAATGGAGAGATTCA 797
Query 659 ATCTTCATCAGATTCAGAAAATGGATTGGGAGATTCTTGATTCGAAGATCAAAACATGGT 718
||||||||||| ||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 798 ATCTTCATCAGGTTCAGAAAATGGATTGGGAGATTCTCGAATCAAAGATCAAAACATGGC 857
Query 719 TAAAAGCTGTGAAATTAGCTGTTCGATCTTTGTTCTTCGGTGAGAGGATTTTAGCTGATC 778
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 858 TAAAAGCTGTGAAATTAGCTGTTAGAAAATTGTTCTTCGGTGAGAGGATTTTAGCTGATC 917
Query 779 ATGTTTTTTCTTCCTCTGGTTTAATTGTTGAATCTTCTTTCACTGAGATTACTCAAGAAG 838
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 918 ATGTTTTCTCTTCCTCTGGTTTAATCGTTGAATCTTCTTTCACTGAGATTACTCAAGAAG 977
Query 839 GAGCTTTGATTCTCTTCACTTTCCCGGAATATGCTGCGAAGATCAAGAAACT-AACTCCT 897
|||| |||||||||||||||||||||||||||||| | |||||||| ||| | ||||||
Sbjct 978 GAGCATTGATTCTCTTCACTTTCCCGGAATATGCTTCCAAGATCAA-AAAGTTAACTCCG 1036
Query 898 GAGAAAATGTTTCGGTTTCTTGATATGTATGAAGCTCTTGCGAATCTCTACGTGGAGATT 957
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1037 GAGAAAATGTTTCGGTTTCTGGATATGTATGAAGCTCTTGCGAATCTCTATGTTGAGATT 1096
Query 958 GAATCGATTTTCTACTTTGAATCAGCAGCTGCGGTTAGATCTCAGGTGATTAACTCGTTA 1017
||||| || |||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1097 GAATCAATCTTCTACTTCGAATCAGCTGCTGCGGTTAGATCTCAGGTGATAAACTCGTTA 1156
Query 1018 GCTAGACTCGGTGATGCTACGAGGTTGATGATGACGGATTTCGAATCGGCGATTCAGAAA 1077
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 GCTAGACTCGGCGATGCGACGAGGTTGATGATGACGGATTTCGAATCGGCGATTCAGAAA 1216
Query 1078 GAAACTTCGAAAACTCCGATCATCGGCGGTGGTGTTCATCCTCTGACTCGTTACGTTATG 1137
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1217 GAAACCTCGAAGACTCCGATCATCGGTGGTGGTGTTCATCCTCTGACTCGTTACGTTATG 1276
Query 1138 AATTACCTCTCCTTCCTCGCCGATTACAGTGAATCAATCACTGCGATATTCGAAAACTGG 1197
|||||||||||||||||||| ||||||||||| || ||| ||||||||||||||||||||
Sbjct 1277 AATTACCTCTCCTTCCTCGCTGATTACAGTGATTCCATCGCTGCGATATTCGAAAACTGG 1336
Query 1198 AAGCTAAGTGTTCCGACTCCGTTACCGGATTCTTTATACATCAGCGGCGGCGACGAAGCG 1257
||||| ||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1337 AAGCTGAGTGTGCCGACGCCGTTGCCGGATTCTTTATACATAAGCGGCGGCGATGAAGCG 1396
Query 1258 AATCCGGAGGATTTGTATTCATCTCCGGTGTCTGTACG-AGTCGCTTGGGTGATTTTACT 1316
|||||||||||| ||||||| |||||||| |||||||| | |||||||||||||||||||
Sbjct 1397 AATCCGGAGGATCTGTATTCGTCTCCGGTCTCTGTACGTA-TCGCTTGGGTGATTTTACT 1455
Query 1317 CACGCTCTGTAAAATCGACGGCAAAGCTCAGCCGTATAAAGACGTTGCTCTGTCTTATCT 1376
|||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1456 CACGCTTTGTAAAATCGACGGTAAAGCTCAGCCGTATAAAGACGTTGCTTTGTCTTATCT 1515
Query 1377 CTTCCTCGCCAACAATCTCCAATACGTCGTCGTTAAAGTCCGATCGTCGAATCTGAAGCT 1436
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1516 CTTCCTCGCTAACAATCTCCAATACGTCGTCGTTAAAGTCCGATCGTCGACTCTGAAGGT 1575
Query 1437 TCTTCTCGGCGACGATTGGGTGTTTAGGCACGAAGAGAAGGTGAAGCTGTATGCTGATAA 1496
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1576 TCTTCTCGGAGACGATTGGGTGTTTAGGCATGAAGAGAAGGTGAAGCTGTATGCTGATAA 1635
Query 1497 GTTTGAGAAGCTTGCGTGGGGGAGAGTGCTGGATTTATTACCGGAGATTCCGACGGAGGA 1556
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||
Sbjct 1636 GTTTGAGAAGCTTGCGTGGGGGAAAGTGCTGGATTTACTACCGGAGATTCCGACGGATGA 1695
Query 1557 GATTTCGCCGGAGGAAGCTAAGGTTTTGGTCGG-GAGATTCAACGATGAGTTTGAGACGT 1615
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1696 GATTTCGCCGGAGGAAGCTAAGGTTTTGGT-GGCGAGATTCAACGATGAGTTTGAGACGT 1754
Query 1616 CGTACCGGAGACAGACTTCGTGGGTCATACCCGACCCGAAACTTAGGGATCAGATTAAAA 1675
||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1755 CGTACCGGAAACAGACTTCGTGGGTTATACCCGACCCGAAACTTAGGGACCAGATTAAAA 1814
Query 1676 TCTCGTTGAGTCAGAAACTTATGCTGGTTTGTACCGAGTTTTACCGGATGAACCGGTT-- 1733
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1815 TCACGTTGAGTCAGAAACTTATGCTGGTTTGTACCGAGTTTTACCGGATGAACCGGTTTG 1874
Query 1734 C----GGTTTGGCTGGAGATAATGAGGCTGGTGTC-AGATATACCCCTGAAGATATAGGA 1788
| ||| ||| |||||||||||||||| | || |||||||||||||||||||| ||
Sbjct 1875 CATATGGTATGGTTGGAGATAATGAGGCTATT-TCCAGATATACCCCTGAAGATATTGGG 1933
Query 1789 AATTACCTCTCGGATCTGTACTTTGGGTCTAGAGGCTCCGGGAGTGTTTCGACAACTGGT 1848
||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1934 AATTACCTCTCGGATCTTTACTTTGGGTCTAGAGGCTCAGGGAGTGTTTCGACAGCTGGT 1993
Query 1849 ggatctggatccggatccggatccgga 1875
|| ||||||||||||||||||||||||
Sbjct 1994 GGGTCTGGATCCGGATCCGGATCCGGA 2020
> AT5G59732.1 | Symbols: | other RNA | chr5:24064478-24066154
FORWARD LENGTH=1579
Length=1579
Score = 1229 bits (665), Expect = 0.0
Identities = 761/808 (94%), Gaps = 4/808 (0%)
Strand=Plus/Minus
Query 748 TTGTTCTTCGGTGAGAGGATTTTAGCTGATCATGTTTTTTCTTCCTCTGGTTTAATTGTT 807
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 807 TTGTTCTTCGGTGAGAGGATTTTAGCTGATCATGTTTTCTCTTCCTCTGGTTTAATCGTT 748
Query 808 GAATCTTCTTTCACTGAGATTACTCAAGAAGGAGCTTTGATTCTCTTCACTTTCCCGGAA 867
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 747 GAATCTTCTTTCACTGAGATTACTCAAGAAGGAGCATTGATTCTCTTCACTTTCCCGGAA 688
Query 868 TATGCTGCGAAGATCAAGAAA-CTAACTCCTGAGAAAATGTTTCGGTTTCTTGATATGTA 926
|||||| | |||||||| ||| ||||||| |||||||||||||||||||| ||||||||
Sbjct 687 TATGCTTCCAAGATCAA-AAAGTTAACTCCGGAGAAAATGTTTCGGTTTCTGGATATGTA 629
Query 927 TGAAGCTCTTGCGAATCTCTACGTGGAGATTGAATCGATTTTCTACTTTGAATCAGCAGC 986
||||||||||||||||||||| || ||||||||||| || |||||||| |||||||| ||
Sbjct 628 TGAAGCTCTTGCGAATCTCTATGTTGAGATTGAATCAATCTTCTACTTCGAATCAGCTGC 569
Query 987 TGCGGTTAGATCTCAGGTGATTAACTCGTTAGCTAGACTCGGTGATGCTACGAGGTTGAT 1046
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 568 TGCGGTTAGATCTCAGGTGATAAACTCGTTAGCTAGACTCGGCGATGCGACGAGGTTGAT 509
Query 1047 GATGACGGATTTCGAATCGGCGATTCAGAAAGAAACTTCGAAAACTCCGATCATCGGCGG 1106
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 508 GATGACGGATTTCGAATCGGCGATTCAGAAAGAAACCTCGAAGACTCCGATCATCGGTGG 449
Query 1107 TGGTGTTCATCCTCTGACTCGTTACGTTATGAATTACCTCTCCTTCCTCGCCGATTACAG 1166
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 448 TGGTGTTCATCCTCTGACTCGTTACGTTATGAATTACCTCTCCTTCCTCGCTGATTACAG 389
Query 1167 TGAATCAATCACTGCGATATTCGAAAACTGGAAGCTAAGTGTTCCGACTCCGTTACCGGA 1226
||| || ||| ||||||||||||||||||||||||| ||||| ||||| ||||| |||||
Sbjct 388 TGATTCCATCGCTGCGATATTCGAAAACTGGAAGCTGAGTGTGCCGACGCCGTTGCCGGA 329
Query 1227 TTCTTTATACATCAGCGGCGGCGACGAAGCGAATCCGGAGGATTTGTATTCATCTCCGGT 1286
|||||||||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 328 TTCTTTATACATAAGCGGCGGCGATGAAGCGAATCCGGAGGATCTGTATTCGTCTCCGGT 269
Query 1287 GTCTGTACG-AGTCGCTTGGGTGATTTTACTCACGCTCTGTAAAATCGACGGCAAAGCTC 1345
|||||||| | ||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 268 CTCTGTACGTA-TCGCTTGGGTGATTTTACTCACGCTTTGTAAAATCGACGGTAAAGCTC 210
Query 1346 AGCCGTATAAAGACGTTGCTCTGTCTTATCTCTTCCTCGCCAACAATCTCCAATACGTCG 1405
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 209 AGCCGTATAAAGACGTTGCTTTGTCTTATCTCTTCCTCGCTAACAATCTCCAATACGTCG 150
Query 1406 TCGTTAAAGTCCGATCGTCGAATCTGAAGCTTCTTCTCGGCGACGATTGGGTGTTTAGGC 1465
||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||
Sbjct 149 TCGTTAAAGTCCGATCGTCGACTCTGAAGGTTCTTCTCGGAGACGATTGGGTGTTTAGGC 90
Query 1466 ACGAAGAGAAGGTGAAGCTGTATGCTGATAAGTTTGAGAAGCTTGCGTGGGGGAGAGTGC 1525
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 89 ATGAAGAGAAGGTGAAGCTGTATGCTGATAAGTTTGAGAAGCTTGCGTGGGGGAAAGTGC 30
Query 1526 TGGATTTATTACCGGAGATTCCGACGGA 1553
|||||||| |||||||||||||||||||
Sbjct 29 TGGATTTACTACCGGAGATTCCGACGGA 2
Score = 937 bits (507), Expect = 0.0
Identities = 597/641 (93%), Gaps = 3/641 (0%)
Strand=Plus/Minus
Query 1 aaaaa-aaaaacaga-aaaagccacaaaaaTGGGGAAGCACTTATTCCGATCATCTCCAC 58
||||| ||||||||| ||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 1457 AAAAATAAAAACAGAGCAAA-CCACAAAAATGGGGAAGCATTTATTCCGATCATCTCCTC 1399
Query 59 CGCCGGAGAAACCAACAGCTCATCTCTCTCTCGCGGAATCAGCTGTTCAAGAATGTATGA 118
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 CACCGGAGAAACCAACAGCTCATCTCTCTCTCGCGGAATCAGCTGTTCAAGAATGTATGA 1339
Query 119 GCAACATCAACGCTGTCATATCAAAATGGACTTCTCCGGCTGCTTCTTCCTCCGACGAGT 178
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1338 GCAACATCAACACCGTCATATCAAAATGGACTTCTCCGGCTGCTTCTTCCTCCGACGACT 1279
Query 179 TCCTCTTCTCCACCAACAGCCGTCGTGAAGCAGAGGAGTTTGTGACTGCCGTTAGACATT 238
||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 1278 TCCTCTTCTCCACCAACAGTCGTCGTGAAGCAGAGGAGTTTGTTACAGCCGTTAGACATC 1219
Query 239 TACAGAGCACCATGCATCGTTTGGTTTCCGTGAATCCTTCGTCGGAGAAGCTAATCTACG 298
|||| ||||| |||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 1218 TACAAAGCACGATGCATCGTTTGGTTTCCGTTAACCCTTCCTCGGAGAAGCTAATCTACG 1159
Query 299 CGCAGAATCTTATGCAATCGGCGATGAGGCTTCTTGAATCAGAGTTTTATCGTGTCTTGA 358
| |||||||| |||||||||||||||| |||||| |||||||||||| ||||||| || |
Sbjct 1158 CACAGAATCTAATGCAATCGGCGATGAAGCTTCTCGAATCAGAGTTTCATCGTGTTTTAA 1099
Query 359 AAGCAAACCGTGAGTATTTAGATCCGGAATCCGTCTCTGTACGTTCTTACAGATCTTCAA 418
|||| |||||||||||||||||||| |||| ||||||||||||||||||||||| || |
Sbjct 1098 AAGCGAACCGTGAGTATTTAGATCCTGAATGTGTCTCTGTACGTTCTTACAGATCATCGA 1039
Query 419 GATTCAGTTCTTCGACTACGACCAGTGTTTCCGATTCAGAAGACGAAATCACTTACGAAG 478
|||||||| ||||||||||||| ||||| |||||||| |||||||||| || ||||||||
Sbjct 1038 GATTCAGTACTTCGACTACGACTAGTGTCTCCGATTCCGAAGACGAAAGCAGTTACGAAG 979
Query 479 AAAACGCCGACGAAGAGCATAGATTCTCCGGTGGAGATTCCGACGCCATGGATGATCTCA 538
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 978 AAAACGCCGACGAAGAGCATAGATTCTCCGGTGGAGATTCCGACGCAATGGATGATCTCA 919
Query 539 AGATGATTGCTGATTGTATGATCTCAACTGGTTACGCTAAAGAATGCGTTAGGGTTTATA 598
||||||||||||||||||||||||| || || |||||||| |||||||||||||||||||
Sbjct 918 AGATGATTGCTGATTGTATGATCTCTACCGGCTACGCTAAGGAATGCGTTAGGGTTTATA 859
Query 599 AAACCGTACGGAAATCGATTGTTGATGAGACTCTGCATAAT 639
||||||||||||||||||||||||||||||| |||||||||
Sbjct 858 AAACCGTACGGAAATCGATTGTTGATGAGACGCTGCATAAT 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97138054575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5