BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950730
Length=2372
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59810.1 | Symbols: ATSBT5.4, SBT5.4 | Subtilase family prot... 3574 0.0
> AT5G59810.1 | Symbols: ATSBT5.4, SBT5.4 | Subtilase family protein
| chr5:24096815-24100557 REVERSE LENGTH=2587
Length=2587
Score = 3574 bits (1935), Expect = 0.0
Identities = 2232/2376 (94%), Gaps = 18/2376 (1%)
Strand=Plus/Plus
Query 1 GAGAACTAGTATTTTTGTATATGAGTATGACGAGAAGATATTCG-GCTACTCAATACTCA 59
||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 152 GAGAACTAGTA-TTTTGTATATGAGTATGACGAGAAGATATTCGAG-TACTCAATACTCA 209
Query 60 AACCCAATGAGCCTCCAAAGTTTATCATCTCTTATTCTCCTCGTCACTCTCTTTTCCTCT 119
||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 210 AACAAAATGAGCCTCCAAAGTTTATCATCTCTTCTTCTCCTCGTCACTCTCTTTTTCTCT 269
Query 120 CCTGCTTTTGCTCTTAAAAAGTCCTACATAGTGTACTTGGGATCTCATGCCCATCCTT-C 178
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 270 CCTGCTTTTGCTCTTAAAAAGTCCTACATAGTGTACTTGGGATCTCACGCCCAT-CTTCC 328
Query 179 TCAAATCTCTTCTGCCCATCTCGATGGTGTTGCTCACTCACATCGCACTTTCCTCGCCTC 238
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 329 TCAAATCTCTTCTGCCCATCTCGATGGTGTTGCTCACTCACATCGCACTTTTCTCGCCTC 388
Query 239 TTTCGTTGGAAGCCATGAAAATGCACAAGAAGCCATCTTTTACTCATACAAGAGACATAT 298
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 389 TTTCGTTGGAAGCCATGAGAATGCAAAAGAAGCCATCTTTTACTCATACAAGAGACATAT 448
Query 299 CAATGGCTTCGCCGCAGTTCTTGACGAAAATGAAGCTGCTGAAATCGCCAAGCATCCTGA 358
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 449 CAATGGCTTCGCCGCAATTCTTGACGAAAATGAAGCTGCAGAAATCGCCAAGCATCCTGA 508
Query 359 TGTTGTCTCTGTAATCCCAAACAAAGGAAGAAAACTTCATACCACTCATTCATGGAATTT 418
||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TGTAGTCTCTGTATTCCCCAACAAAGGAAGAAAACTTCATACCACTCATTCATGGAATTT 568
Query 419 CATGCTCCTGGAGAAAAATGGTGTTGTTCACAAGTCCTCTCTATGGAATAAAGCAGGATA 478
||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 569 CATGCTCCTTGCGAAAAATGGTGTTGTTCACAAGTCCTCTCTTTGGAATAAAGCAGGATA 628
Query 479 TGGAGAGGACACAATCATCGCTAACTTGGACACAGGTGTGTGGCCTGAGTCAAAAAGCTT 538
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 629 CGGAGAGGATACAATCATCGCTAACTTAGACACAGGTGTGTGGCCTGAGTCAAAAAGCTT 688
Query 539 CAGCGATGAAGGGTATGGAGCTGTTCCAGCTAGGTGGAAAGGTAGATGCCACAAGGATGT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 CAGCGATGAAGGGTATGGAGCTGTTCCAGCTAGGTGGAAAGGTAGATGCCACAAGGATGT 748
Query 599 TCCTTGCAACAGGAAGCTCATTGGTGCTAGATACTTCAACAAAGGTTACTTAGCCTACAC 658
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 749 TCCTTGCAACAGGAAGCTCATCGGTGCTAGATACTTCAACAAAGGTTACTTAGCTTACAC 808
Query 659 AGGTCTTCCCTCTAACGCCTCCT-TGGAAACCTGTCGTGACCACGATGGTCACGGTAGCC 717
||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 809 AGGCCTTCCTTCTAACGCCTCCTATG-AAACCTGTCGTGACCACGATGGTCACGGTAGCC 867
Query 718 ACACTCTTTCCACCGCGGCCGGTAACTTTGTTCCCGGAGCCAATGTGTTTGGCATCGGGA 777
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 868 ACACTCTTTCCACCGCGGCTGGTAACTTTGTTCCCGGAGCCAATGTGTTTGGTATCGGGA 927
Query 778 ATGGGACAGCCAGCGGCGGCTCTCCTAAAGCTAGAGTTGCGGCTTACAAGGTGTGCTGGC 837
|||| |||||||| || || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 928 ATGGAACAGCCAGTGGTGGTTCTCCTAAAGCTAGAGTCGCGGCTTACAAGGTGTGCTGGC 987
Query 838 CGCCTGTGAATGGCGCAGAGTGCTTTGATGCTGATATTTTGGCAGCTATTGATGCTGCCA 897
| |||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 988 CCCCTGTGGATGGCGCGGAGTGCTTTGATGCTGATATTTTGGCAGCGATTGAGGCTGCCA 1047
Query 898 TCGACGACGGTGTGGATGTTCTCTCGGCTTCAGTGGGTGGAGACGCCGGGGATTACATGA 957
|||| ||||| |||||||||||||||||||||||||| ||||| || || ||||||||||
Sbjct 1048 TCGAAGACGGCGTGGATGTTCTCTCGGCTTCAGTGGGAGGAGATGCTGGAGATTACATGA 1107
Query 958 GCGATGGCATTGCCATTGGATCATTCCACGCCGTCAAAAACGGGGTGACGGTTGTGTGCT 1017
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1108 GCGATGGTATAGCCATTGGATCCTTCCACGCCGTCAAAAACGGGGTGACGGTTGTGTGCT 1167
Query 1018 CAGCTGGAAATTCAGGTCCTAAGGCTGGAACTGTCTCAAACGTAGCACCATGGATTATTA 1077
| ||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||||||
Sbjct 1168 CTGCTGGAAATTCAGGTCCTAAGTCTGGCACTGTCTCAAACGTTGCACCATGGGTTATTA 1227
Query 1078 CAGTCGGAGCTAGCTCCATGGACCGAGAGTTTCAAGCCTTTGTTGAGCTGAACAACGGCC 1137
||||||| |||||||||||||| || ||||||||||| ||||||||||| || |||||||
Sbjct 1228 CAGTCGGTGCTAGCTCCATGGATCGGGAGTTTCAAGCTTTTGTTGAGCTCAAAAACGGCC 1287
Query 1138 AAAGCTTCAAGGGAACAAGCCTCTCGAAGCCTTTGCCCGAAGATAAGATGTATAGCCTCA 1197
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 1288 AAAGCTTCAAGGGAACAAGCCTCTCAAAGCCTTTGCCTGAAGAAAAGATGTATAGCCTCA 1347
Query 1198 TCAGTGCTGAAGAAGCTAAAGTTTCCAATGGAAATGCGACTGATGCATTGCTATGCAAGA 1257
||||||||| ||| ||||| || |||||||||||| ||| |||||||||||||||||||
Sbjct 1348 TCAGTGCTGCAGATGCTAATGTAGCCAATGGAAATGTGACAGATGCATTGCTATGCAAGA 1407
Query 1258 AAGGTAGCCTAGACCCGGAGAAGGTGAAGGGGAAGATCGTGGTGTGTCTCAGAGGAGACA 1317
||||||||||||||||| |||||||||| ||||||||| |||||||||| ||||||||||
Sbjct 1408 AAGGTAGCCTAGACCCGAAGAAGGTGAAAGGGAAGATCTTGGTGTGTCTGAGAGGAGACA 1467
Query 1318 ACGCACGTGTGGACAAAGGACA-GCAAGCA-CTCGCTGCTGGAGCTGCGGGAATGATTCT 1375
|||||||||||||||| ||| | |||||| || ||||||||||||||||||||| ||||
Sbjct 1468 ACGCACGTGTGGACAAGGGA-ATGCAAGCGGCT-GCTGCTGGAGCTGCGGGAATGGTTCT 1525
Query 1376 ATGCAACGACAAGGCGAGTGGAAACGAAATCATCTCAGACGCTCATGTTCTTCCTGCTTC 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 ATGCAACGACAAGGCGAGTGGAAACGAAATCATCTCAGACGCTCATGTTCTTCCTGCTTC 1585
Query 1436 TCAAATCGACTACAAAGAAGGTGAAGTTTTGTTTTCGTACCTAAGTTCCACAAAAGATCC 1495
||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct 1586 ACAAATTGACTACAAAGATGGTGAAACTTTGTTTTCTTACCTAAGTTCCACAAAAGATCC 1645
Query 1496 CAAAGGTTACATCAAAGCACCAACCGCTACGCTGAACACAAAGCCTGCTCCTTTCATGGC 1555
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1646 CAAAGGTTACATCAAAGCACCTACCGCTACGCTGAACACAAAGCCTGCTCCTTTCATGGC 1705
Query 1556 CTCTTTCTCTTCCAGAGGACCTAACTCCATCACACC-GGGCATCCTCAAACCTGACATCA 1614
||||||||||||||||||||| ||| |||||||||| ||| |||||||| || |||||||
Sbjct 1706 CTCTTTCTCTTCCAGAGGACCAAACACCATCACACCAGGG-ATCCTCAAGCCCGACATCA 1764
Query 1615 CTGCACCCGGTGTCAACATCATAGCCGCCTTCACCGAAGCCACAAGCCCTACGGACTTAG 1674
|||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||
Sbjct 1765 CTGCACCCGGTGTCAACATCATAGCCGCCTTCACGGAAGCCACGGGCCCTACAGACTTAG 1824
Query 1675 ACTCTGACCATCGAAGAACTCCTTTCAACACCGAATCAGGAACTTCCATGTCTTGTCCTC 1734
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1825 ACTCTGACAATCGAAGAACTCCTTTCAACACCGAATCAGGAACTTCCATGTCCTGTCCTC 1884
Query 1735 ACATCTCAGGTGTCGTTGGTCTCTTGAAGACTCTTCACCCCCAATGGAGTCCTGCCGCTA 1794
||||||| |||||||||||||| ||||| || |||||||| || ||||||||||| ||||
Sbjct 1885 ACATCTCCGGTGTCGTTGGTCTTTTGAAAACACTTCACCCTCATTGGAGTCCTGCAGCTA 1944
Query 1795 TCCGCTCAGCCATCATGACCACTTCAAGAACCAGAGACAACAGACGTAAGCCAATGGTTG 1854
||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||
Sbjct 1945 TCCGCTCAGCCATCATGACAACTTCAAGAACCAGAAACAACAGACGTAAGCCCATGGTTG 2004
Query 1855 ATGAATCATTCAAGAAAGCAAATCCCTTCAGCTACGGCTCAGGTCATGTCCAACCCAATA 1914
||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 2005 ATGAATCCTTCAAGAAAGCAAATCCCTTCAGCTACGGTTCAGGCCATGTCCAACCCAATA 2064
Query 1915 AAGCCGCCCATCCTGGTCTTGTCTATGATCTCACAATAGGAGACTACTTGGACTTCCTCT 1974
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 2065 AAGCCGCCCATCCTGGTCTTGTCTATGATCTCACCACAGGAGACTACTTGGACTTCCTCT 2124
Query 1975 GCGCCGTTGGCTACAACAACACCGTAGTTCAACTCTTTGCCGAGGACCCACAGTACATGT 2034
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 2125 GCGCCGTTGGCTACAACAACACCGTGGTTCAACTCTTTGCCGAGGACCCACAGTACACGT 2184
Query 2035 GCCGCCAAGGAGCCAATCTTCTCGACTTCAACTACCCTTCAATCACTGTCCCAAACCTCA 2094
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2185 GTCGCCAAGGAGCCAATCTTCTCGACTTCAACTACCCTTCAATCACTGTCCCAAACCTCA 2244
Query 2095 CGGACTCTATCACCGTCACTCGCAAACTCACAAACGTTGGACCGCCAGCTACCTACAACG 2154
||| ||||||||||||||| || ||||||| |||||||||||| || |||||||||||||
Sbjct 2245 CGGGCTCTATCACCGTCACCCGAAAACTCAAAAACGTTGGACCACCTGCTACCTACAACG 2304
Query 2155 CTCACTTCCGAGAGCCACTTGGAGTTAGCGTCTCCGTGGAGCCAAAACAGCTCACGTTCA 2214
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2305 CTCGTTTCCGAGAGCCACTTGGAGTTCGCGTCTCCGTGGAGCCAAAACAGCTCACGTTCA 2364
Query 2215 ACAAAACTGGTGAAGTGAAGATATTTCAGATGACTCTTCGTCCCAAGTCAGCGAAGCCTT 2274
|||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||
Sbjct 2365 ACAAAACTGGTGAAGTGAAGATATTTCAGATGACTCTTCGTCCCTTGCCAGTGACGCCTT 2424
Query 2275 CTGGCTACGTCTTCGGAGAGTTGACGTGGACTGATTCACATCATTACGTTAGGAGTCCCA 2334
| |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2425 CAGGCTACGTTTTTGGAGAGCTGACGTGGACTGATTCACATCATTACGTTAGGAGTCCCA 2484
Query 2335 TCGTCGTCGAACTTTAATTTCAAGCTAGCCTCATTC 2370
|||||||| |||||| ||||||||||||||||
Sbjct 2485 TCGTCGTCCAACTTT-----CAAGCTAGCCTCATTC 2515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117770478570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5