BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950731

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G59820.1 | Symbols: RHL41, ZAT12 | C2H2-type zinc finger fam...   819    0.0  


> AT5G59820.1 | Symbols: RHL41, ZAT12 | C2H2-type zinc finger family 
protein | chr5:24102972-24103787 FORWARD LENGTH=816
Length=816

 Score =  819 bits (443),  Expect = 0.0
 Identities = 508/538 (94%), Gaps = 9/538 (2%)
 Strand=Plus/Plus

Query  10   atcatcatcaGAAGAAGAAAAATGGTTGCGAGATCGGAGATTAAGTCGACGGTGGATGTT  69
            ||||||||||  ||||||||||||||||||| ||||||||| ||||||||||||||||| 
Sbjct  81   ATCATCATCATCAGAAGAAAAATGGTTGCGATATCGGAGATCAAGTCGACGGTGGATGTC  140

Query  70   ACGGCGGCGAATTGTTTGATGCTTTTATCAAGAGTTGGACAAGAAAACGTTGACGGTGGA  129
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct  141  ACGGCGGCGAATTGTTTGATGCTTTTATCTAGAGTTGGACAAGAAAACGTTGACGGTGGC  200

Query  130  GATCAAAAACGCGTTTTCACATGTAAAACGTGTTTGAAGGAGTTTCATTCGTTTCAAGCC  189
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct  201  GATCAAAAACGCGTTTTCACATGTAAAACGTGTTTGAAGCAGTTTCATTCGTTCCAAGCC  260

Query  190  TTAGGAGGTCACCGTGCGAGTCACAAGAAGCCTAATAACGACACTTTGTCGTCTGGATTG  249
            ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct  261  TTAGGAGGTCACCGTGCGAGTCACAAGAAGCCTAACAACGACGCTTTGTCGTCTGGATTG  320

Query  250  GTGAAGAAGGTGAAAAC-TACGTCCCATCCTTGTCCCATATGTGGAGTGGAGTTTCCGAT  308
             |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct  321  ATGAAGAAGGTGAAAACGT-CGTCGCATCCTTGTCCCATATGTGGAGTGGAGTTTCCGAT  379

Query  309  GGGACAAGCTTTGGGTGGACACATGAGGAGACACAGAAACGAAAGTGGGGCTGGC-GGCG  367
            ||||||||||||||| |||||||||||||||||||| ||||| ||||||||| || || |
Sbjct  380  GGGACAAGCTTTGGGAGGACACATGAGGAGACACAGGAACGAGAGTGGGGCT-GCTGGTG  438

Query  368  GCGCGTTGGTTACACGCGCTTTGTTGCCGGAGCCGACAGTGACGACGTTGAAGAAATCTA  427
            |||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct  439  GCGCGTTGGTTACACGCGCTTTGTTGCCGGAGCCCACGGTGACTACGTTGAAGAAATCTA  498

Query  428  GCAGTGGGAAGAGAGTGGCTTGTTTGGATCTGAGTCTAGGGATGGTGGACAATTTGAATC  487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  499  GCAGTGGGAAGAGAGTGGCTTGTTTGGATCTGAGTCTAGGGATGGTGGACAATTTGAATC  558

Query  488  TCAAGTTGGAGCTTGGAAGAACAGTTTATTGATTT-ATTT-TT--C-TAAAATTTTCT  540
            ||||||||||||||||||||||||||||||||||| |||| ||  | | |||||||||
Sbjct  559  TCAAGTTGGAGCTTGGAAGAACAGTTTATTGATTTTATTTATTTTCCTTAAATTTTCT  616



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5