BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950749
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59990.1 | Symbols: | CCT motif family protein | chr5:24150... 1195 0.0
> AT5G59990.1 | Symbols: | CCT motif family protein | chr5:24150983-24153084
REVERSE LENGTH=949
Length=949
Score = 1195 bits (647), Expect = 0.0
Identities = 714/747 (96%), Gaps = 2/747 (0%)
Strand=Plus/Plus
Query 21 ATGTGTGGACACGTCAGCACTTCCATAACCTCCGGCGACAATTGTCCATGTTTCCTATAC 80
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1 ATGTGTGGACACGTCAGCACTTCTATAACCTCCGGCGACAACTGTCCATGTTTTCTATAC 60
Query 81 TCCGACGACATAGTGGCTCCTCCTCAACTGCATGATGATCATCATCATCAGTTCCCGCCT 140
|||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct 61 TCCGACGACATAGTGGCTCCTCCTCAGCTGCTTGATCATCATCATCATCAGTTCCCGCCT 120
Query 141 CCGCCTTTGCCGCTTCTTATGATGTGCCACAACTCTCTATACGCGGCAGATGCGGTTTCA 200
||||||||| |||||||||||||| |||| ||||||||||||||||| || |||||||||
Sbjct 121 CCGCCTTTGGCGCTTCTTATGATGAGCCAAAACTCTCTATACGCGGCCGAGGCGGTTTCA 180
Query 201 GGGTTCGGTTACTTTGATTCCGGCATGAACGGTGGGGGCGGAAGCAGCAGCTGCGACTCG 260
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 181 GGGTTCGGTTACTTTGATTCCGGCATGAACGGTGGTGGTGGAAGCAGCAGCTGCGACTCG 240
Query 261 CCAAGCTCTATAGGCAGTGGCGGAGAGAGTCTTGTTATGCAGAGAAGTGCTAGTAGCCAT 320
||||||||||| || ||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 241 CCAAGCTCTATGGGGAGTGGCGGAGAGAGTCTTGTTATGCAGAGGAGTGTTAGTAGCCAT 300
Query 321 AATGGCTTTTCTGGTAATTACGCAACGGCCCACGATTTCGTTAACAATGATGATGGGCCA 380
||||||||||| ||||||||| || ||||||| |||||||||||| ||||||||||||||
Sbjct 301 AATGGCTTTTCCGGTAATTACACAGCGGCCCATGATTTCGTTAACGATGATGATGGGCCA 360
Query 381 GCGAGACGGGCCCTTAGCGCCGGAGATCTACCCAGGAGTAGTAGAAGAGAGAGCAGTACA 440
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 GTGAGACGGGCCCTTAGCGCCGGAGATCTACCCAGGAGTAGCAGAAGAGAGAGCAGTACG 420
Query 441 GTGTGGAGTGAGAGCAATGCAATAATAGAAGGAATGAGCAAAGCCTACAAGTATAGTCCT 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTGTGGAGTGAGAGCAATGCAATAATAGAAGGAATGAGCAAAGCCTACAAGTATAGTCCT 480
Query 501 GAGGAGAAGAAAGAAAAGATCGAGAAATATCGTAGCAAACGAAACCTTAGGAATTTCAAC 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAGGAGAAGAAAGAAAAGATCGAGAAATATCGTAGCAAACGAAACCTTAGGAATTTCAAC 540
Query 561 AAGAGGATTAAGTATGAATGCAGGAAGACATTAGCAGACAGTAGGCCAAGAATAAGAGGG 620
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 AAGAGGATTAAGTACGAATGCAGGAAGACATTAGCGGACAGTAGGCCAAGAATAAGAGGG 600
Query 621 AGATTTGCAAGAAATGATGAGATATCACAACAAGAACAAGTTGATGTTATGGAAGCCGTG 680
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 AGATTTGCAAGAAATGATGAGATCTCACAACAAGAACAAGTTGATGTTATGGAAGCCGTG 660
Query 681 GTTGGAGATGTCGACACGTGGGCATCTTTTCTTGATTCTTTCTCTGCTAATCACTTCCTT 740
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTAGGAGATGTCGACACGTGGGCATCTTTTCTTGATTCTTTCTCTGCTAATCACTTCCTC 720
Query 741 AACTAGTTTAATCTCT-CTTATGTTTG 766
||||| |||||||||| || |||||||
Sbjct 721 AACTAATTTAATCTCTTCT-ATGTTTG 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37223502927
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5