BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950751
Length=490
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 688 0.0
> AT5G60000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G22970.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24159331-24159780
REVERSE LENGTH=450
Length=450
Score = 688 bits (372), Expect = 0.0
Identities = 425/451 (94%), Gaps = 2/451 (0%)
Strand=Plus/Plus
Query 21 ATGGACACTCTTATAATAGTCTCGATCATGACCATGATGATATTTTCTACGTTCGCAACC 80
||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1 ATGGACACTCTTATAATGGTCTCGATCATGACTATGATGTTATTTTCTACGTTCGCAACC 60
Query 81 ACACGTGCTGCCACTCTTCTCGTGTCCAACGAGCTGAAGAGACGTGGTGATGTTCCTGTC 140
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACACGTGCCGCCACTCTTCTCGTGTCCAACGAGCTGAAGAGACGTGGTGATGTTCCTGTC 120
Query 141 TTCGTCACGTGCCACCCAACCCCTTGGCTGTCCAAACTCGTACCATTAGGTCAGAAGTTG 200
|||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 121 TTCGTCACGTGCCACCGAACCCCTTGGCTCTCCAAACTCGTACCTTTAGGTCAGAAGTTG 180
Query 201 CTGATAGAAATTCCAAAGACTGTCGGCGACAATTCCGTTGATGAGAAGGCGGCT-GGATC 259
|||||||| || |||| ||| |||||||||| | ||||||||||||||| | |||||
Sbjct 181 CTGATAGAGATCCCAACCACTACCGGCGACAATGCTGTTGATGAGAAGGCG-CAAGGATC 239
Query 260 TAGACCGTGGCGGCCAACAACTTGCATAGGAACGTTTTACAGAGAAGCACATTTCGGAAG 319
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 240 TAGACCGTGGCAGCCAAGAACTTGCATAGGAACGTTTTACAGAGAAGCACATTTCGGGAT 299
Query 320 GCACGAGACACCGTACGTTTTGTACAATTCGGACAAAGATGCTACGGAGTGTAAAAACTC 379
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 GCACGAGACACCGTACGTTTTGTACAATTCGGACAAAGATGCTACGGAGTCTAAAAACTC 359
Query 380 ATGTTTCGTCGTTGTCAAGGACGATGGATTTTATCGTTGGAACAACAATAAGAGAGTCTG 439
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 ATGTTTCGTCGTTGTCAAAGACGATGGATTTTATCGTTGGAACAACAATAAGAGAATCTG 419
Query 440 GGACAAGGTTTTTCCGATCATTTGGAAGTAA 470
||||||||||||||||||||||||||| |||
Sbjct 420 GGACAAGGTTTTTCCGATCATTTGGAACTAA 450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23358878355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5