BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950765

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45900.1 | Symbols: APG7, ATAPG7, ATG7, ATATG7 | ThiF family...   204    6e-52
  AT5G60120.2 | Symbols: TOE2 | target of early activation tagged...   189    2e-47


> AT5G45900.1 | Symbols: APG7, ATAPG7, ATG7, ATATG7 | ThiF family 
protein | chr5:18615222-18618560 FORWARD LENGTH=2300
Length=2300

 Score =  204 bits (110),  Expect = 6e-52
 Identities = 142/157 (90%), Gaps = 3/157 (2%)
 Strand=Plus/Plus

Query  140  AGAGTAAGATCGGGGCATTGGCTGAGAAGGAAACCCCACCAATCGTACTTCAATTCGCTC  199
            ||| |||||||  | || |||||||||| ||||| ||| ||||| |||||||||||||||
Sbjct  69   AGA-TAAGATC-AGCCA-TGGCTGAGAAAGAAACTCCAGCAATCATACTTCAATTCGCTC  125

Query  200  CATTGAACAGTTCCGTCTACGAAGGTTTCTGGTATAGCTTCTCGTCTTTGAAACTTGATA  259
            ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| || |
Sbjct  126  CATTGAACAGTTCCGTCGACGAAGGTTTCTGGCATAGCTTCTCCTCTTTGAAACTCGACA  185

Query  260  AACTCGGAATCGATGATTCTCCGATTCCAATCACCGG  296
            |||||||||||||||||||||||||| ||||||||||
Sbjct  186  AACTCGGAATCGATGATTCTCCGATTTCAATCACCGG  222


> AT5G60120.2 | Symbols: TOE2 | target of early activation tagged 
(EAT) 2 | chr5:24207689-24211743 FORWARD LENGTH=2297
Length=2297

 Score =  189 bits (102),  Expect = 2e-47
 Identities = 111/115 (97%), Gaps = 1/115 (1%)
 Strand=Plus/Plus

Query  25    ATGGAGACCCATATGGCTGCAGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGT  84
             ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1569  ATGGAGAACCACATGGCTGCAGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGT  1628

Query  85    TCAGACCATCTTACTAACCGGCATGCCCTTCCTTCTGCGTTCTTTTCACCCCATG  139
             ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct  1629  TCAGACCATCTTAATAACCGGCATGCCCTTCCTTCTGCGTTCTTTTCACCC-ATG  1682



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18800138126


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5