BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950768
Length=773
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60130.1 | Symbols: | AP2/B3-like transcriptional factor fa... 532 1e-150
AT5G60140.1 | Symbols: | AP2/B3-like transcriptional factor fa... 324 9e-88
> AT5G60130.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr5:24211871-24212958 REVERSE LENGTH=903
Length=903
Score = 532 bits (288), Expect = 1e-150
Identities = 316/330 (96%), Gaps = 0/330 (0%)
Strand=Plus/Plus
Query 423 CAGTATCTGGATGATCGCGAGAACCCGTCTTTTACTCTGACCCTTAATCCGAAGAAGAAA 482
||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||
Sbjct 574 CAGTATCTGGATGATCGTGAGAACCCATCTTTTACTCTGATCCTTAATCCGAAGAAGAAA 633
Query 483 AGCCAACTGCTCATCCCAGCTCGGGTTATCAAAGACTATGACTTGCACTTCCCTGAGAGT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 AGCCAACTGCTCATCCCAGCTCGGGTTATCAAAGACTATGACTTGCACTTCCCTGAGAGT 693
Query 543 ATCACTCTCGTCGATCCACTTGTCAACAAATTTGGGACATTGGAGAAAAAGATCAAGATT 602
|||||||| |||||||||||||| || ||||| |||||||||||||| |||||||||||
Sbjct 694 ATCACTCTTGTCGATCCACTTGTGAAAAAATTCGGGACATTGGAGAAGCAGATCAAGATT 753
Query 603 CAGACGAATGGCAGTGTGTTTGTCAAGGGATTTGGCAGTATCATCAGAAGGAATCAAGTG 662
||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 754 CAGACAAATGGTAGTGTGTTTGTCAAGGGATTTGGCAGTATCATCAGAAGGAATAAAGTG 813
Query 663 AAGACAACGGATAAGATGATGTGTGAGATCAAGAAGACTGGTGATAATAACCTGGTTCAA 722
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 814 AAGACAACGGATAAGATGATATTTGAGATCAAGAAGACTGGTGATAATAACCTGGTTCAA 873
Query 723 ACAATCAAGATTCACATTATCAGTGGATGA 752
||||||||||||||||||||||||||||||
Sbjct 874 ACAATCAAGATTCACATTATCAGTGGATGA 903
Score = 381 bits (206), Expect = 5e-105
Identities = 292/333 (88%), Gaps = 8/333 (2%)
Strand=Plus/Plus
Query 100 TGGTACTACCCATTTCTTTCAACAGCTGTTTACCAAAGCCTTTGCCTGAAACTGTAACTG 159
||||||||||||||||||||| ||| | |||||||||| |||||||||||||||||||||
Sbjct 2 TGGTACTACCCATTTCTTTCACCAGATTTTTACCAAAGTCTTTGCCTGAAACTGTAACTG 61
Query 160 TTAGAAGCATTTATGGAAAGGTTTGGAAATTGGTGTTGAGGAAATGTGGTAGTGA--A-G 216
|||||||||||| |||||| |||||||||||| ||| | ||||||| || |||| | |
Sbjct 62 TTAGAAGCATTTCTGGAAATATTTGGAAATTGGAGTTAAAGAAATGTTGTGGTGATGATG 121
Query 217 -T--TGAGAGCTTTGTTATGGTTAATGGTTGGAAGAGCTTTGTGAAGGACGAAGATTTGA 273
| ||||| || |||||||||||||| |||||||| ||||||||||||||||| | |
Sbjct 122 ATACTGAGAAATTCGTTATGGTTAATGGGTGGAAGAGGATTGTGAAGGACGAAGATCTCA 181
Query 274 AGGGAGGAGATTTCTTGGAGTTTGAGTTTGATGGCTCTCGGCTCTT-CAATTTCTGTATC 332
|||||||||||||||| ||||||||||||||||||||| | | || | |||||||||||
Sbjct 182 AGGGAGGAGATTTCTTAGAGTTTGAGTTTGATGGCTCTAGT-TGTTTCCATTTCTGTATC 240
Query 333 TACGAGCATGGGACATTGTGTAAAAGGATAAGAAGAAGCTCAGAGCAAAGCGAGGAGATC 392
|| |||||| ||||| ||||||||| |||||||||||| ||||| |||||||||||||||
Sbjct 241 TATGAGCATAGGACAATGTGTAAAAAGATAAGAAGAAGTTCAGATCAAAGCGAGGAGATC 300
Query 393 AAAATGGAATCTGATAGTGATGaaaaaaaTCAG 425
||| |||||||||||||||||||| ||||||||
Sbjct 301 AAAGTGGAATCTGATAGTGATGAACAAAATCAG 333
> AT5G60140.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr5:24214077-24215453 REVERSE LENGTH=1089
Length=1089
Score = 324 bits (175), Expect = 9e-88
Identities = 313/377 (83%), Gaps = 20/377 (5%)
Strand=Plus/Plus
Query 51 CTTCCAAAATTCTTCAAAGTGTA-TTTACCTGA-TGAATCCGGAGATGATCTGGTACTAC 108
||| |||| ||||| ||| ||| || ||| | ||||||||| ||||||||||||||||
Sbjct 137 CTT-CAAAGTTCTTTAAACCGTACCTT-CCT-AGTGAATCCGGTGATGATCTGGTACTAC 193
Query 109 CCATTTCTTTCAACAGCTGTTTACCAAAGCCTTTGCCTGAAACTGTAACTGTTAGAAGCA 168
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 194 CCATTTCTTTCAACAGCTGTTTACCAAAGTCTTTGCCTAAAACTGTAACTGTTAGAAGCA 253
Query 169 TTTATGGAAAGGTTTGGAAATT-GGTGTTGAGGAAATGTGGTAGTGAAGTTGAGAGCTTT 227
||| |||||| |||||||||| || ||| | |||||||||| |||| |||||||| |||
Sbjct 254 TTTCTGGAAACATTTGGAAATTAGG-GTTTAAGAAATGTGGTGGTGAGGTTGAGAGATTT 312
Query 228 GTTATGGTTAATGGTTGGAAGA-GCTTTGTGAAGG-ACGAAGATTTGAAGGGAGGAGATT 285
|||||||||| ||||||||||| | || || |||| ||||| | |||| || ||||||
Sbjct 313 GTTATGGTTAGTGGTTGGAAGAAGATT-GT-AAGGGACGAAAACCTGAACGGTGGAGATC 370
Query 286 TCTTGG-AGTTTGAGTTTGATGGCTCTCGGCTCTTCAATTTCTGTATCTACGAGCATGGG 344
||||| | ||||||||||||||||||| | || ||||||| ||||| || |||| |
Sbjct 371 TCTTGTCA-TTTGAGTTTGATGGCTCTCATTTTTTTAATTTCTCTATCTTTGACCATGAG 429
Query 345 AC-ATTGTGTAAAAGGAT-AAGAAGAAGCTCAGAGCAAAGCGAGGAGATCA--AAA-TGG 399
|| | |||||| ||| | |||| |||| |||||||||||| |||| |||| ||| |||
Sbjct 430 ACTAC-GTGTAAGAGGCTTAAGA-GAAGTTCAGAGCAAAGCAAGGACATCATCAAAGTGG 487
Query 400 AATCTGATAGTGATGaa 416
||||||| |||| |||
Sbjct 488 GATCTGATTGTGAAGAA 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37575141956
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5