BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950770
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60142.1 | Symbols: | AP2/B3-like transcriptional factor fa... 508 2e-143
> AT5G60142.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr5:24216180-24217691 REVERSE LENGTH=1141
Length=1141
Score = 508 bits (275), Expect = 2e-143
Identities = 344/377 (91%), Gaps = 5/377 (1%)
Strand=Plus/Plus
Query 2 GTTAGGGTTTCAAAGAGGTG-A-A-GATGAACAGAGGAAATTCTGGGGGTAATTGTCTTC 58
|||||||||||||||||||| | | |||||||||||||| ||||| || | |||||||||
Sbjct 78 GTTAGGGTTTCAAAGAGGTGAAGATGATGAACAGAGGAATTTCTGTGGATGATTGTCTTC 137
Query 59 CAAAGTTCTTCAAAGTGTACTTACCTGATGAATCCGGAGATGATCTGGAATTACCCATCT 118
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 138 CAAAGTTCTTCAAAGTGTACTTACCTGATGATTCCGGAGATGATTTGGAATTACCCATCT 197
Query 119 CTTTCAACAGCTTTTTACCAAAGTCGTTGCCTAAAAATGTAATTGTTAGAAGTATTTATG 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 198 CTTTCAACAGCTTTTTACCAAAGTCGTTGCCTAAAAATGTAATTGTTAGAAGCATTTATG 257
Query 179 GAAACATTTGGAAAATGGCGCTTAAGAAGTGTTGTGGTCAT-GTTGAGAGATTTACTATG 237
||||||| |||||| ||||| ||| ||||| ||||||| || || ||||||||| ||||
Sbjct 258 GAAACATCTGGAAAGTGGCGTTTAGGAAGTTTTGTGGTGATAGT-GAGAGATTTGTTATG 316
Query 238 GTTAATGGGTGGAAGAAGATTTTAAAGGACGAAAATCTGAAGGGTGGAGAGTTCTTGGAG 297
|||||||||||||||||||| | ||||||||| || |||| |||||||||||||| ||
Sbjct 317 GTTAATGGGTGGAAGAAGATAGTCAAGGACGAAGATTTGAAAGGTGGAGAGTTCTTAGAA 376
Query 298 TTTGAGTTTGATGGCTCTTGGTGTTTCAACTTCTGTATCTACGGCCGTGCAACGTTTAAA 357
||||||||||||||||||||||||||||| ||||||||||| || |||||||||| ||||
Sbjct 377 TTTGAGTTTGATGGCTCTTGGTGTTTCAATTTCTGTATCTATGGTCGTGCAACGTGTAAA 436
Query 358 AAGCTTAGAAGTTCAGT 374
| |||||||||||||||
Sbjct 437 AGGCTTAGAAGTTCAGT 453
Score = 490 bits (265), Expect = 8e-138
Identities = 302/320 (94%), Gaps = 1/320 (0%)
Strand=Plus/Plus
Query 371 CAGTACACTATCTGGATAATCACATGAACCCTTTCTTTACAGTGAACCAGCATCGGCAAA 430
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 CAG-ACAATATCTGGATAATCACATGAACCCTTTCTTTACAGTGAACCAGCATCGGCAAA 881
Query 431 TAAAATACAATCTGCTGCGCATACCAACTAAGGTCATAACTAAGTCTGGCTTACACTTCC 490
||||||| ||| |||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 882 TAAAATATAATATGCTGCGCATACCAACTAAGGTCATAACGAAGTATGGCTTACACTTCC 941
Query 491 CTGAGTTCATCAATCTGATTGATCCACTCGAGAAAATGTTCGGTAAGTTGAAGAGGAAAG 550
|||||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 942 CTGAGTTCATCAATTTGATTGATCCACTCGAGAAAAACTTTGGTAAATTGAAGAGGAAAG 1001
Query 551 TTGAGGGTCAAACAATCAAGGGATTCCGTAGTATAATCAGAAGGAATAATGTGAAGTTGA 610
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TTAAGGGTCAAACAATCAAGGGATTCCGTAGTATAATCAGAAGGAATAATGTGAAGTTGA 1061
Query 611 CTGATAAAGTGATTTGTGAGTTAGTAAAGGAGATGGATGGTCTGGTTCGCGAAATCAAGG 670
||| || |||||||||||||||| |||||||||||||||||| ||||| ||||||||||
Sbjct 1062 ATGACAAGGTGATTTGTGAGTTAGAAAAGGAGATGGATGGTCTTGTTCGAGAAATCAAGG 1121
Query 671 TCCATGTTATAAGAGGATGA 690
||||||||||||||||||||
Sbjct 1122 TCCATGTTATAAGAGGATGA 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34410390695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5