BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950774
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60110.1 | Symbols: APUM18, PUM18 | pumilio 18 | chr5:242019... 1476 0.0
AT5G60180.1 | Symbols: APUM19, PUM19 | pumilio 19 | chr5:242330... 1448 0.0
> AT5G60110.1 | Symbols: APUM18, PUM18 | pumilio 18 | chr5:24201954-24202937
FORWARD LENGTH=984
Length=984
Score = 1476 bits (799), Expect = 0.0
Identities = 925/987 (94%), Gaps = 3/987 (0%)
Strand=Plus/Plus
Query 27 ATGGCAGTCGCCGATAATTCCTTTTTAATGTCGACCATGTTCAATGCTTCACCATACCCT 86
||||||||||| |||||| |||||| ||||||||||||||||||||||| |||| |||||
Sbjct 1 ATGGCAGTCGCTGATAATCCCTTTTCAATGTCGACCATGTTCAATGCTTTACCAAACCCT 60
Query 87 AAAGGAATTTCCGGTTACATTCCTCCTCCAGGTTTCGCCCCAGGCGCCTCCGCCACGCCC 146
|||||||| ||||||| |||||||||||| || ||||||||| |||||||||||||||||
Sbjct 61 AAAGGAATCTCCGGTTCCATTCCTCCTCCTGGATTCGCCCCACGCGCCTCCGCCACGCCC 120
Query 147 TTGCACACAGCTCTGTTCAACCTAATGACTGACGGAGAAGCTGTGTCTTACTTTAGGGAG 206
|||||| |||||||||||||||||||||||||||| || | |||||||||||||| |||
Sbjct 121 TTGCACGCAGCTCTGTTCAACCTAATGACTGACGGCGATGGTGTGTCTTACTTTAAAGAG 180
Query 207 ATGATCTCAAAGTCAGACAAAACAGTGCTTCAGAGGATGGCGTCGTTGCTGACGTCAGAC 266
||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||| |||
Sbjct 181 ATGATCTCAAATTCAGACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTTACGTCTGAC 240
Query 267 TCCGATTACTTCATGGCGATCGTCACAAACAAGTACGGCTCGAGACGCGTGCAAAAGCTC 326
||||||||||||||| |||||||||||| ||||| |||||||||||||||||| ||||||
Sbjct 241 TCCGATTACTTCATGTCGATCGTCACAACCAAGTTCGGCTCGAGACGCGTGCAGAAGCTC 300
Query 327 CTCGGGAAATCAGATGAGGTGGACGCGTTCTTCTGTGCCGCTATCTTACGCCGCTTCCTC 386
||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 301 CTCGGCAAATCAGATGACGTGGACGCCTTCTTCTGTGCCGCTATCTTGCGCCGCTTCCTC 360
Query 387 CACATCACGACCGACAAATACGCATCCTACGTGACGATACGAGGCATGGTCGTTTTCGAC 446
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 CACATCACGACCGACAAATACGCATCCTACGTGACGATACGAGCCATGGTCGTTTTCGAC 420
Query 447 AAGGAGATGAAAAAGCCAATGTACGAGCACATTCTCTACCACGCTCTCGACATAGCGTGT 506
|||| |||||||||| || ||||||||| |||||||||||||||||||||| ||||||||
Sbjct 421 AAGGTGATGAAAAAGGCATTGTACGAGCGCATTCTCTACCACGCTCTCGACCTAGCGTGT 480
Query 507 GACCAACACGGCTGCATCGCACTCAACGATATCATAACCGACGCTGACGATCCTTACTAC 566
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 481 GACCAGCACGGCTGCATCGCGCTCAATGATATCATAACCGACGCTGACGATCCTTACTAC 540
Query 567 AGAGATCAGCTACTAGACTTGGTCGCATCCAACGCTCTCTGTCTAAGCAACGATGCTTCA 626
||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 541 AGAGATCAGCTACTAGAATTGGTCGCATCCAACGCTCTCCGGCTAAGCAACGATGCTTCA 600
Query 627 GGGAACTTTGTGGTCCAACATGTGCTTACACTGTACGAGTTGCGTTGCATTCACAACATC 686
||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 601 GGGAACTTTGTGGTCCAACATGTGCTTACACTGTATGACTCGCGTTGCATTCACAACATC 660
Query 687 GCGGTTAATCTTTTTGGCCATTGCATTGATCTCTCGTTTAAGAAGTATGGAAGCTACATC 746
|| |||||||||| ||| || |||||||| || |||||||||||||||||||||||||||
Sbjct 661 GCCGTTAATCTTTATGGTCAGTGCATTGAGCTATCGTTTAAGAAGTATGGAAGCTACATC 720
Query 747 GTGGAGAAGCTTTTGGAGGCGGAGGAGTCAATGCTTGTGGTGGTTGTGGAGCTTTTGGAT 806
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 721 GTGGAGAAGCTTTTGGAGGTGGAGGAGTCAATGGTTGTGGTGGTTGTGGAGCTTTTGGGT 780
Query 807 TGCGATGGAGACACGTTGATGAGGCTGGCGAGGAATGAGTTTGGGAATTTCGTGGTGGTC 866
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGCGATGGAGACAGGTTGATGAGGCTGGCGAGGAATGAGTTTGGGAATTTCGTGGTGGTC 840
Query 867 AAGGCACTGAGATTCACCAAGGCGATGTCTAAGATTGATCTGTTTTGGGGTTTGGTGCAG 926
||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 841 AAGGCTCTGAGATTCACCAAG---ATGTCTAGGATGGATCTGTTTTGGGGTTTGGTGCAG 897
Query 927 AAGCTCATGCCTTTTATCCATCTCTTGCGTAGATCTCACGGAAGCAACATTGCAAGCATC 986
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 898 AAGCTCATGCCTTTTATCCGTCTCTTGCGTAGATCTCACGGAAGCAACATTGCAAACATC 957
Query 987 TTGGACTCATTTAGGCTTCGTTGCTGA 1013
|||||||||||||||||||||||||||
Sbjct 958 TTGGACTCATTTAGGCTTCGTTGCTGA 984
> AT5G60180.1 | Symbols: APUM19, PUM19 | pumilio 19 | chr5:24233024-24234007
REVERSE LENGTH=984
Length=984
Score = 1448 bits (784), Expect = 0.0
Identities = 920/987 (93%), Gaps = 3/987 (0%)
Strand=Plus/Plus
Query 27 ATGGCAGTCGCCGATAATTCCTTTTTAATGTCGACCATGTTCAATGCTTCACCATACCCT 86
||||||||| |||||||| |||||| ||||||||||||||||||||||| |||| |||||
Sbjct 1 ATGGCAGTCTCCGATAATACCTTTTCAATGTCGACCATGTTCAATGCTTTACCAAACCCT 60
Query 87 AAAGGAATTTCCGGTTACATTCCTCCTCCAGGTTTCGCCCCAGGCGCCTCCGCCACGCCC 146
| || || |||||||||||||||||| | || ||||||||| |||||||||||||||||
Sbjct 61 ACAGAAACCTCCGGTTACATTCCTCCTTCTGGATTCGCCCCACGCGCCTCCGCCACGCCC 120
Query 147 TTGCACACAGCTCTGTTCAACCTAATGACTGACGGAGAAGCTGTGTCTTACTTTAGGGAG 206
|||||| |||||||||||||||||||||||||||| || | |||||||||||||| |||
Sbjct 121 TTGCACGCAGCTCTGTTCAACCTAATGACTGACGGCGATGGTGTGTCTTACTTTAAAGAG 180
Query 207 ATGATCTCAAAGTCAGACAAAACAGTGCTTCAGAGGATGGCGTCGTTGCTGACGTCAGAC 266
||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||
Sbjct 181 ATGATCTCAAAGTCAGACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTTACGTCTGAC 240
Query 267 TCCGATTACTTCATGGCGATCGTCACAAACAAGTACGGCTCGAGACGCGTGCAAAAGCTC 326
||||||||||||||| |||||||||||| ||||| |||||||||||||||||| ||||||
Sbjct 241 TCCGATTACTTCATGTCGATCGTCACAACCAAGTTCGGCTCGAGACGCGTGCAGAAGCTC 300
Query 327 CTCGGGAAATCAGATGAGGTGGACGCGTTCTTCTGTGCCGCTATCTTACGCCGCTTCCTC 386
||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 301 CTCGGCAAATCAGATGACGTGGACGCCTTCTTCTGTGCCGCTATCTTGCGCCGCTTCCTC 360
Query 387 CACATCACGACCGACAAATACGCATCCTACGTGACGATACGAGGCATGGTCGTTTTCGAC 446
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 CACATCACGACCGACAAATACGCATCCTACGTGACGATACGAGCCATGGTCGTTTTCGAC 420
Query 447 AAGGAGATGAAAAAGCCAATGTACGAGCACATTCTCTACCACGCTCTCGACATAGCGTGT 506
|||| |||||||||| || ||||||||| |||||||||||||||||||||| ||||||||
Sbjct 421 AAGGTGATGAAAAAGGCATTGTACGAGCGCATTCTCTACCACGCTCTCGACCTAGCGTGT 480
Query 507 GACCAACACGGCTGCATCGCACTCAACGATATCATAACCGACGCTGACGATCCTTACTAC 566
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 481 GACCAGCACGGCTGCATCGCGCTCAATGATATCATAACCGACGCTGACGATCCTTACTAC 540
Query 567 AGAGATCAGCTACTAGACTTGGTCGCATCCAACGCTCTCTGTCTAAGCAACGATGCTTCA 626
||||||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||
Sbjct 541 AGAGATCAGCTACTAGAATTGGTCGTATCCAACGCTCTCCGGCTAAGCAACGATGCTTCA 600
Query 627 GGGAACTTTGTGGTCCAACATGTGCTTACACTGTACGAGTTGCGTTGCATTCACAACATC 686
||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 601 GGGAACTTTGTGGTCCAACATGTGCTTACACTGTATGACTCGCGTTGCATTCACAACATC 660
Query 687 GCGGTTAATCTTTTTGGCCATTGCATTGATCTCTCGTTTAAGAAGTATGGAAGCTACATC 746
|| |||||||||| ||| || |||||||| || |||||||||||||||||||||||||||
Sbjct 661 GCCGTTAATCTTTATGGTCAGTGCATTGAGCTATCGTTTAAGAAGTATGGAAGCTACATC 720
Query 747 GTGGAGAAGCTTTTGGAGGCGGAGGAGTCAATGCTTGTGGTGGTTGTGGAGCTTTTGGAT 806
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 721 GTGGAGAAGCTTTTGGAGGTGGAGGAGTCAATGGTTGTGGTGGTTGTGGAGCTTTTGGGT 780
Query 807 TGCGATGGAGACACGTTGATGAGGCTGGCGAGGAATGAGTTTGGGAATTTCGTGGTGGTC 866
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGCGATGGAGACAGGTTGATGAGGCTGGCGAGGAATGAGTTTGGGAATTTCGTGGTGGTC 840
Query 867 AAGGCACTGAGATTCACCAAGGCGATGTCTAAGATTGATCTGTTTTGGGGTTTGGTGCAG 926
||||||||||||||||| |||| |||| | ||| ||||||||||||||||||||||||
Sbjct 841 AAGGCACTGAGATTCACAAAGGAGATG---AGGATGGATCTGTTTTGGGGTTTGGTGCAG 897
Query 927 AAGCTCATGCCTTTTATCCATCTCTTGCGTAGATCTCACGGAAGCAACATTGCAAGCATC 986
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 898 AAGCTCATGCCTTTTATCCATCTCTTGCGTAGATCTCACGGAAACAACATTGCAAACATC 957
Query 987 TTGGACTCATTTAGGCTTCGTTGCTGA 1013
|||||| ||||||||||||||||||||
Sbjct 958 TTGGACACATTTAGGCTTCGTTGCTGA 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50836956764
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5