BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950775
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60190.1 | Symbols: | Cysteine proteinases superfamily prot... 1096 0.0
> AT5G60190.1 | Symbols: | Cysteine proteinases superfamily protein
| chr5:24234541-24236163 FORWARD LENGTH=995
Length=995
Score = 1096 bits (593), Expect = 0.0
Identities = 673/713 (94%), Gaps = 0/713 (0%)
Strand=Plus/Plus
Query 9 TCAGTATACGCTATGGGAAATACTTCTGGTGACGAAAAGATACTCAGCTATGAAGATGTT 68
|||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||
Sbjct 139 TCAGTATACGCTATGGGAAATACTTCTGATGACGACAAGATCCTCAGCTATGAAGATGTT 198
Query 69 GTCCTCAGGAGATCAGATTTGGACATCCTAAACGGACCCAATTTTCTAAACGATCGTGTT 128
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 199 GTCCTCAGGAGATCAGATTTGGACATCCTAAACGGACCCATTTTTCTAAACGATCGTGTT 258
Query 129 ATCGAGTTCTACCTAAGCTTCTTATCCACAGTTCACAGTTCCCCTACCATCTCACTAATC 188
|||||||||||||| |||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 259 ATCGAGTTCTACCTTAGCTTCTTATCCACGGTTCACAGTTCCACTACCATCTCGCTAATC 318
Query 189 CCTCCCTCCATTGCTTTCTGGATCTCAAACTGCCCCGACACTGAATACCTCAAAGATTTC 248
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 319 CCTCCCTCCATTGCTTTCTGGATCTCAAACTGCCCGGACACCGAATACCTCAAAGATTTC 378
Query 249 ATGAAACCCCTTAATTTGCGCGACAAAGACCTCCTGATATTCCCTGTAAACGACAATACA 308
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 379 ATGAAACCACTTAATTTGCGCGACAAAGACCTCCTGATACTCCCTGTAAACGACAATTCA 438
Query 309 AATGTCGAGGTAGCAGAAGGCGGATTACATTGGAGCTTACTTGTGTACTACAAAGAGGCC 368
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 439 AATGTCGAGGTAGCAGAAGGCGGATTACATTGGAGCTTACTCGTGTACTACAAAGAGGCC 498
Query 369 AACACGTTTGTCCATCACGATAGCTTCATGGGAGTGAATAAATGGAGCGCAAAAGATCTC 428
||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| | |||
Sbjct 499 AACACGTTTGTCCATCACGATAGCTACATGGGAGTGAATAGATGGAGCGCGAAACAGCTC 558
Query 429 TTCAAGGCGGTTTCGCCGTTTGTGTCTAATGGAGATGCATCATACAAGGAATGCACTGAT 488
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 TTCAAGGCGGTTTCTCCGTTTGTGTCTAATGGAGATGCATCATACAAGGAATGCACTGAT 618
Query 489 ACACCGCAGCAAAAGAACGGGTACGACTGCGGTGTTTTCCTTCTTGCTATCGCTCGGGTT 548
||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 619 ACACCACAGCAAAAGAATGGGTACGACTGCGGTGTTTTCCTTCTTGCTACCGCTCGGGTA 678
Query 549 ATATGCGAATGGTTCAGCGCTGGAGGAATGAAGAATCGGGATGAGCTGTGGTTTACTAAT 608
||||| |||||||||||| |||||||||||||||| |||||||||||||||||| |||||
Sbjct 679 ATATGTGAATGGTTCAGCTCTGGAGGAATGAAGAACCGGGATGAGCTGTGGTTTGCTAAT 738
Query 609 GTGAAGGAGACTTTACCTGATTTGGTTAATCATCTGAGAGAAGAGATATTGGGGCTGATC 668
|||||||||||| |||| ||| ||||||| ||||||||||||||||| |||| |||||||
Sbjct 739 GTGAAGGAGACTGTACCAGATCTGGTTAACCATCTGAGAGAAGAGATTTTGGCGCTGATC 798
Query 669 AAGAGGTTGATGTCTGAGGGTGCGAGTAAATGAGAAATGGTTATTGAATGTGG 721
|||| ||||||||||||| ||| |||||| ||||| |||||||||||| ||||
Sbjct 799 AAGAAGTTGATGTCTGAGAGTGTGAGTAAGTGAGAGATGGTTATTGAACGTGG 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34962966312
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5