BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950804
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60553.1 | Symbols: | Defensin-like (DEFL) family protein |... 272 1e-72
> AT5G60553.1 | Symbols: | Defensin-like (DEFL) family protein
| chr5:24343205-24343444 FORWARD LENGTH=240
Length=240
Score = 272 bits (147), Expect = 1e-72
Identities = 212/243 (87%), Gaps = 6/243 (2%)
Strand=Plus/Plus
Query 21 ATGTCGTCAAAAATGAAATTTGCGGCTCTTCTCATCGTTGTAATTTCTCTCCTTGTTAAC 80
|||||||| ||||| ||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct 1 ATGTCGTCGAAAATTAAATTTGTAGCTCTTCTCATCGTAGTAATTTCTCTCCTTCTTAAC 60
Query 81 AATGTGAAATCCACTCGAGAGATAAACCTCTCCGGGGAAATTTGTGGATTCTATGAACCT 140
|||| | |||||||||||||||| |||||||| |||||||||||||| |||| |||
Sbjct 61 AATGCGCAATCCACTCGAGAGAT---CCTCTCCGCGGAAATTTGTGGATGGAATGACCCT 117
Query 141 GCTGTATTTTGTAAGAGAAAAGAAGATTGTTTTGAGAAATGTGGAGGCAGGCCTTCTAAT 200
|||||| |||||||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 118 GCTGTACATTGTAAGACAAAAGAAGATTGTTTTGAGAAATGTGGAGGCAGACCTGCTAAG 177
Query 201 AAAGTTTTCTGTGTGCGAACAGGA--C-ATGGCTTTGATCGTGTGTGTTGTTGTCGCGCT 257
|||||||| |||||||| ||||| | || ||| ||||||| |||||||||||||||||
Sbjct 178 AAAGTTTTTTGTGTGCGTCCAGGAGACCATAGCTATGATCGTCTGTGTTGTTGTCGCGCT 237
Query 258 TAA 260
|||
Sbjct 238 TAA 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12969079242
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5