BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950810
Length=1175
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60620.1 | Symbols: GPAT9 | glycerol-3-phosphate acyltransfe... 1980 0.0
> AT5G60620.1 | Symbols: GPAT9 | glycerol-3-phosphate acyltransferase
9 | chr5:24367198-24369790 FORWARD LENGTH=1342
Length=1342
Score = 1980 bits (1072), Expect = 0.0
Identities = 1141/1175 (97%), Gaps = 1/1175 (0%)
Strand=Plus/Plus
Query 1 TCGGAAACCGGCGACGTAAGCTATGAGCAGTAAGGCAGGGAAGCTGGTGACTTCAAGATC 60
|||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||
Sbjct 47 TCGGAAACCGGCGACGTAAGCTATGAGCAGTACGGCAGGGAGGCTCGTGACTTCAAAATC 106
Query 61 CGAGCTTGATCTCGATCACCCTAACATCGAAGATTACCTTCCTTCTGGTTCTTCCATCAA 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 CGAGCTTGACCTCGATCACCCTAACATCGAAGATTACCTTCCTTCTGGTTCTTCCATCAA 166
Query 121 CGAGCCTCGCGGCAAGCTCAGCCTGCGTGATTTGCTAGACATCTCCCCAACGCTCACTGA 180
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 167 TGAACCTCGCGGCAAGCTCAGCCTGCGTGATTTGCTAGACATCTCTCCAACGCTCACTGA 226
Query 181 AGCTGCTGGTGCCATTGTTGATGACTCGTTCACAAGATGTTTCAAATCGAATCCTCCAGA 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 227 AGCTGCTGGTGCCATTGTTGATGACTCGTTCACAAGATGTTTCAAATCAAATCCTCCAGA 286
Query 241 ACCTTGGAACTGGAACATTTACTTATTCCCACTTTGGTGCTTTGGTGTTGTTGTTAGATA 300
||||||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||
Sbjct 287 ACCTTGGAACTGGAATATTTACTTATTCCCACTATACTGCTTTGGGGTTGTTGTTAGATA 346
Query 301 CTGTATTCTCTTTCCCTTGAGGTGCTTCACTTTAGCTTTTGGGTGGATTATTTTCCTTTC 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 CTGTATCCTCTTTCCCTTGAGGTGCTTCACTTTAGCTTTTGGGTGGATTATTTTCCTTTC 406
Query 361 ATTGTTTATCCCCGTAAATGCGCTGCTGAAAGGTCAAGATAGGTTGAGGAAAAAGATAGA 420
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 407 ATTGTTTATCCCTGTAAATGCGTTGCTGAAAGGTCAAGATAGGTTGAGGAAAAAGATAGA 466
Query 421 GAGGGTTTTGGTGGAAATGATATGCAGCTTTTTTGTCGCCTCATGGACCGGAGTTGTCAA 480
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 467 GAGGGTCTTGGTGGAAATGATTTGCAGCTTTTTTGTCGCCTCATGGACCGGAGTTGTCAA 526
Query 481 ATATCACGGTCCACGGCCTAGCATCCGTCCTAAGCAGGTCTATGTTGCCAACCATACTTC 540
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 ATATCACGGGCCACGTCCTAGCATCCGTCCTAAGCAGGTCTATGTTGCCAACCATACTTC 586
Query 541 AATGATTGATTTCATCGTCTTGGAGCAGATGACCGCATTTGCTGTTATAATGCAGAAGCA 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 587 AATGATTGATTTCATCGTATTGGAGCAGATGACCGCATTTGCTGTTATAATGCAGAAGCA 646
Query 601 TCCTGGCTGGGTTGGGCTTCTGCAAAGCACAATATTAGAGAGTGTGGGATGTATCTGGTT 660
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TCCTGGTTGGGTTGGTCTTCTGCAAAGCACAATATTAGAGAGTGTGGGATGTATCTGGTT 706
Query 661 CAATCGTTCAGAGGCAAAGGATCGTGAAATTGTAGCAAAAAAGTTAAGGGACCATGTCCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 CAATCGTTCAGAGGCAAAGGATCGTGAAATTGTAGCAAAAAAGTTAAGGGACCATGTCCA 766
Query 721 AGGAGCTGACAATAATCCTCTTCTCATATTTCCCGAGGGGACATGTGTAAATAATAATTA 780
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 767 AGGAGCTGACAGTAATCCTCTTCTCATATTTCCCGAAGGGACATGTGTAAATAATAATTA 826
Query 781 CACAGTGATGTTTAAGAAGGGTGCTTTTGAATTGGACTGCACTGTTTGTCCAATTGCAAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 CACAGTGATGTTTAAGAAGGGTGCTTTTGAATTGGACTGCACTGTTTGTCCAATTGCAAT 886
Query 841 TAAATACAACAAGATTTTTGTTGACGCCTTCTGGAATAGCAGAAAACAATCATTTACTAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 TAAATACAACAAGATTTTTGTTGACGCCTTCTGGAATAGCAGAAAACAATCATTTACTAT 946
Query 901 GCACTTGCTGCAACTCATGACATCATGGGCTGTTGTGTGTGAAGTGTGGTACTTGGAACC 960
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 947 GCACTTGCTGCAACTCATGACATCATGGGCTGTTGTATGTGAAGTGTGGTACTTGGAACC 1006
Query 961 CCAAACTATAAGGCCCGGTGAAACAGGGATTGAGTTTGCAGAGAGGGTCAGAGACATGAT 1020
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1007 ACAAACCATAAGGCCCGGTGAAACAGGAATTGAATTTGCAGAGAGGGTCAGAGACATGAT 1066
Query 1021 ATCTCTTCGGGCGGGTCTCAAAAAGGTCCCTTGGGATGGATACTTGAAGTATTCGAGACC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 ATCTCTTCGGGCGGGTCTCAAAAAGGTCCCTTGGGATGGATACTTGAAGTATTCGAGACC 1126
Query 1081 AAGCTCCAAGCATAGTGAACGCAAGCAACAGAGTTTCGCAGAGTCGATCCTGGCTAGATT 1140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 AAGCCCCAAGCATAGTGAACGCAAGCAACAGAGTTTCGCAGAGTCGATCCTGGCTAGATT 1186
Query 1141 GGAAGAGAAGTGAATGTAAAGATTGAAGCTATATT 1175
||||||||||||||||||||||| |||| ||||||
Sbjct 1187 GGAAGAGAAGTGAATGTAAAGAT-GAAGTTATATT 1220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57680426205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5