BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950814
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60660.1 | Symbols: PIP2F, PIP2;4 | plasma membrane intrinsi... 1352 0.0
> AT5G60660.1 | Symbols: PIP2F, PIP2;4 | plasma membrane intrinsic
protein 2;4 | chr5:24375457-24376989 REVERSE LENGTH=1142
Length=1142
Score = 1352 bits (732), Expect = 0.0
Identities = 821/864 (95%), Gaps = 5/864 (1%)
Strand=Plus/Plus
Query 5 TCTCTC-TCATCTTTGGCCATGGCAAAAGATGAT-GATGTTCAA-GAGGGTGGAGCACCG 61
|||||| ||||||||||||||||||||||| | |||| | || ||| ||||| |||||
Sbjct 32 TCTCTCATCATCTTTGGCCATGGCAAAAGA-CTTGGATG-TGAACGAGAGTGGACCACCG 89
Query 62 GCGGCGAGAGACTACAGGGATCCGCCTCCCGCACCATTGTTGGACATGGAGGAAATTCGG 121
|||||||||||||||| ||||||||||||||||||||| || ||||||||||| || ||
Sbjct 90 GCGGCGAGAGACTACAAGGATCCGCCTCCCGCACCATTTTTCGACATGGAGGAGCTTAGG 149
Query 122 AAGTGGTCGCTATATAGAGCGGTCATAGCTGAGTTCGTGGCGACACTTCTGTTCCTCTAC 181
|| ||| |||| ||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 150 AAATGGCCGCTTTATAGAGCGGTCATAGCTGAGTTTGTAGCAACACTTCTGTTCCTCTAC 209
Query 182 GTCTCAATCCTAACCGTAATCGGCTACAAAGCTCAAACCGATGCAACCGCCGGAGGAGTA 241
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 GTCTCAATCCTGACTGTAATCGGCTACAAAGCTCAAACCGATGCAACCGCCGGAGGAGTG 269
Query 242 GATTGCGGCGGCGTAGGAATATTGGGAATTGCGTGGGCGATCGGTGGAATGATCTTTGTT 301
||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 270 GATTGTGGCGGCGTAGGAATATTGGGTATTGCGTGGGCTTTCGGTGGAATGATCTTTGTT 329
Query 302 CTCGTTTACTGTACCGCCGGTATCTCCGGTGGTCATATAAATCCGGCTGTGACGGTGGGA 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 CTCGTTTACTGTACCGCCGGTATCTCCGGTGGTCATATAAATCCGGCTGTGACGGTGGGA 389
Query 362 CTATTCCTGGCTCGTAAAGTGTCATTGGTGCGGACAGTGTTATACATTGTGGCTCAGTGC 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 CTATTCCTGGCTCGTAAAGTGTCATTGGTGCGGACAGTGTTATACATTGTGGCTCAGTGC 449
Query 422 CTTGGTGCCATCTGCGGTTGTGGTCTCGTCAAAGCATTCCAAAGTTCTTACTACACCAGA 481
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 450 CTTGGTGCCATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAGA 509
Query 482 TATGGAGGTGGAGCCAACGAGCTCGCCGACGGCTACAACAAAGGTACCGGACTCGGTGCC 541
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 510 TATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGGACTCGGTGCC 569
Query 542 GAGATCATCGGAACTTTTGTCCTTGTTTACACCGTCTTCTCGGCCACCGATCCCAAGCGA 601
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 570 GAGATCATTGGAACTTTTGTCCTTGTATACACCGTCTTCTCGGCAACCGATCCCAAGCGA 629
Query 602 AGTGCTCGTGACTCTCACGTGCCAGTGTTGGCGCCACTTCCCATTGGATTTGCCGTCTTC 661
| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 630 AATGCTCGTGACTCTCACGTGCCAGTTTTGGCTCCACTTCCCATTGGCTTTGCCGTCTTC 689
Query 662 ATGGTTCATTTAGCCACCATTCCCATCACCGGAACCGGTATCAACCCGGCTCGTAGCTTT 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 ATGGTTCATTTAGCCACCATTCCCATCACCGGAACCGGTATCAACCCGGCTCGTAGCTTT 749
Query 722 GGAGCTGCCGTTATTTACAACAACGAAAAGGCCTGGGACGACCAATGGATATTTTGGGTT 781
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 750 GGAGCTGCCGTTATTTACAACAACGAAAAGGCCTGGGACGACCAATGGATTTTTTGGGTT 809
Query 782 GGACCGATGATCGGAGCAGCAGCGGCAGCGTTTTACCATCAGTTTATTTTAAGAGCGGCT 841
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 810 GGACCGATGATCGGAGCAGCAGCAGCAGCGTTTTACCATCAGTTTATTTTAAGAGCGGCT 869
Query 842 GCGATTAAAGCTCTTGGCTCCTTT 865
|||||||||||||||||||| |||
Sbjct 870 GCGATTAAAGCTCTTGGCTCATTT 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43954878625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5