BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950830

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36050.1 | Symbols:  | Endoplasmic reticulum vesicle transpo...   224    2e-58


> AT1G36050.1 | Symbols:  | Endoplasmic reticulum vesicle transporter 
protein | chr1:13450204-13453683 FORWARD LENGTH=1733
Length=1733

 Score =  224 bits (121),  Expect = 2e-58
 Identities = 158/175 (90%), Gaps = 6/175 (3%)
 Strand=Plus/Plus

Query  29   ATCTAAGTTCGATA-TACGTTTTCCTGCTCTACCATGTTCGATTCTTAGTGTTGATGCTA  87
            ||| || || |||| |||| |||||||||||| |||||||||||||||||||||||||||
Sbjct  474  ATC-AACTTTGATATTACG-TTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTA  531

Query  88   TGGATATTAGTGGAGAACTGCTT-TGTGACGTGAAACATGATATTATAAAGAGAAGATTA  146
            |||||||||||||||| || | | | |||||||||||||||||| |||||||||||||||
Sbjct  532  TGGATATTAGTGGAGAGCTTCATCT-TGACGTGAAACATGATATCATAAAGAGAAGATTA  590

Query  147  GATTCAAATGGCAACACTTTAAGAGGCAAGACATGACGTAATAGGCGCTACTAAG  201
            ||||| |||||||||||| || ||||||||||| |||| ||||||||||||||||
Sbjct  591  GATTCTAATGGCAACACTATA-GAGGCAAGACAGGACGGAATAGGCGCTACTAAG  644



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9054243180


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5