BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950832
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60820.1 | Symbols: | RING/U-box superfamily protein | chr5... 1790 0.0
> AT5G60820.1 | Symbols: | RING/U-box superfamily protein | chr5:24469587-24470895
FORWARD LENGTH=1309
Length=1309
Score = 1790 bits (969), Expect = 0.0
Identities = 1179/1276 (92%), Gaps = 32/1276 (3%)
Strand=Plus/Plus
Query 13 CCGGAAAATATGGCGGAGCTGTCTTGCCTTCAGATCCACGATGCTAACGATGCCGTTTTC 72
|||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct 41 CCGGAAAATATGGCGGAGATGTCTTACCTTCAGATCGACGATGCTAACGATGCCGTTTTC 100
Query 73 AACCATTACCACCACCAACGGCGGCTACATGATCGCCTGAGAGATCAATCGTTTTCTCAG 132
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 101 AACCATTACCGCCACCAACGGCGGCTACATGATCACCTGAGAGATCAATCGTTTTCTCAG 160
Query 133 ATCCTCTATCCGCTTCCTCACTGGGTCCAATCAGACGACGGCGATCTCTACGTCTCTGAA 192
||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 161 ATCCTATATCCGCTTCCTCACTGGATCCAATCAGACGACGGCGATCTCTACATCTCTGAA 220
Query 193 TCCGATTTTTCTCCCGGCGACGTTTCGGTTTCCGATTTAGTATTCACGGCGGCCGACGGT 252
||||||||||| |||||||||||||||| |||||| ||||||||||| | | |||||||
Sbjct 221 ACCGATTTTTCTTCCGGCGACGTTTCGGTGTCCGATCTAGTATTCACGACCGACGACGGT 280
Query 253 CTTGATCTACTCGATCGGCGTAGCTTTGTCATGGATCTGTTCCACCAACGCGTTGAACAA 312
|| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 281 CTCGATCTTCTCGATCGGCGTAGCTTTGTTATGGATCTGTTCCACCAACGCGTTGAGCAA 340
Query 313 TCTCAGGTATGTCCGCTTGATGATGATGGAATCGATGATTTCGAAAATTACGAGATGCGT 372
||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 341 TCTCAGGTAACTCCGCTTGATAATGACGGAATCGATGATTTCGAAAATTACGAGATGCGT 400
Query 373 GGAG-ATAATGTGGAACTTGATTTTGGATTGGAGTTAGAATCTGGT-----TT-CGTTGA 425
| || ||||||||||||||||||||||||||||| | ||||||||| || ||||||
Sbjct 401 G-AGGATAATGTGGAACTTGATTTTGGATTGGAGATGGAATCTGGTAACGGTTTCGTTGA 459
Query 426 TAGTGATCTTGTTCTTAACCTTAATGAACACGATTTCGTTGATGGGATGAGGTTATTAGG 485
||||||||||||| |||||||||||||||||| || | |||||||||||||||||||
Sbjct 460 TAGTGATCTTGTTGTTAACCTTAATGAACACG-TT--G---ATGGGATGAGGTTATTAGG 513
Query 486 GATTGAGTCACGCGATGTTGTAGTTACAGTGGAATCGGGTTTTGATTCTGATTATGAAGA 545
|||||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 514 GATTGAGTCAGGCGATGTTATAGTTACAGTGGAATCGTGTTTTGATTCTGATGATGAAGA 573
Query 546 TGATCAAGAGAAGGATGAGAGTGAGATTTGGGgaattgatttgaatgaagaagatgaata 605
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 574 TGATCAAGAGAAGGAAGAGAGTGAGATTTGGGGAATAGATTTGAATGAAGAAGATGAGTA 633
Query 606 tgtgaatga-g--ga-g-----gatgatgaagaagaagatgCTAGTGTGACAATTCCTCT 656
||||||||| | || | |||||||||||||||||||||||||||||||| |||||
Sbjct 634 TGTGAATGATGATGATGATAATGATGATGAAGAAGAAGATGCTAGTGTGACAATCCCTCT 693
Query 657 TTGTTGGGATTCACTTCAGTTGGAAGATTTAGGAATAAACAACGAGGATTTCGAATGGGA 716
|||||||||||||||||| || |||||||||||||||||||| ||||||| ||| |||||
Sbjct 694 TTGTTGGGATTCACTTCAATTAGAAGATTTAGGAATAAACAATGAGGATTGCGAGTGGGA 753
Query 717 AGAAGTTGATGGTGACGATGAGAGGGAGGTTTCAAGCGTTTTAG-A-----TGAT-A-A- 767
|||||||||| |||| |||||||||||||||| || ||||||| | |||| | |
Sbjct 754 AGAAGTTGATAGTGATGATGAGAGGGAGGTTTTGAGTGTTTTAGCAGAAGCTGATGATAA 813
Query 768 CAATTCGGTATCAGTCTCTGTCTCAGCCACAATCTCTTTAGAAGATTTAGCGATAAGTGA 827
|||||| ||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||
Sbjct 814 CAATTCTGTATCAGTCTCTGTCGCAGCTACAATATCTTTGGAAGATTTAGCGATAAGTGA 873
Query 828 GAGAAGGGGAAGTAATAGTCTAGGGTGGGAAGTTTTGTTGAATTCTCGTAGTCTTGAGTT 887
|||||||||||||| || |||||||||||||||| ||||||||||||||||||| |||||
Sbjct 874 GAGAAGGGGAAGTAGTAATCTAGGGTGGGAAGTTCTGTTGAATTCTCGTAGTCTCGAGTT 933
Query 888 TAACCTAGATGATGCAGAAAGCAACTTGGAGTTATACATTGGTGATATTGATCATGAAGA 947
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TAATCTAGATGATGCAGAAAGCAACTTGGAGTTATACATTGGTGATATTGATCATGAAGA 993
Query 948 AGAAGATTATGAAGATTATCTTCATACAACAGAGTATGAGATGTTGTTTGAAGCTGAGAT 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 AGAAGATTATGAAGATTATCTTCATACAACAGAGTATGAGATGTTGTTTGAAGCTGAGAT 1053
Query 1008 CTCATCTGGTATTGGTAAGCCTCCAGCATCCAAATCATTCATAAAGAATCTGAAAGTGTC 1067
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1054 TTCATCTGGTATTGGTAAGCCTCCAGCATCTAAATCATTCATAAAGAATCTGAAAGTGTC 1113
Query 1068 TCCTCTGACCAATGAGGATGTTATGGAGAACGATGATGACGCGGTGTGTTGTGCGGTTTG 1127
|||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1114 TCCTTTGAGCAATGAGGATGTTATGGAGAACGATGATGATGCGGTGTGTTGTGCGGTTTG 1173
Query 1128 CAAAGAAGAGATGAATGTAGGAAAGGAGGTTGCAGAGTTGCCTTGTAGACATAAGTACCA 1187
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 CAAGGAAGAGATGATTGTAGGAAAGGAGGTTGCAGAGTTGCCTTGTAGACATAAGTACCA 1233
Query 1188 TAGTGAATGTATTGTTCCATGGCTCGGGATTAGGAATACGTGTCCTGTTTGTCGTTTCGA 1247
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1234 TAGTGAATGTATTGTTCCATGGCTTGGGATTAGAAATACGTGTCCTGTTTGTCGTTTTGA 1293
Query 1248 GTTGCCTTCGGATTGA 1263
||||||||| ||||||
Sbjct 1294 GTTGCCTTCAGATTGA 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63102085065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5