BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950835

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50900.1 | Symbols: GDC1 | Ankyrin repeat family protein | c...   852    0.0   
  AT1G50910.1 | Symbols:  | unknown protein; Has 1105 Blast hits ...   411    5e-114


> AT1G50900.1 | Symbols: GDC1 | Ankyrin repeat family protein | 
chr1:18866197-18867204 FORWARD LENGTH=793
Length=793

 Score =  852 bits (461),  Expect = 0.0
 Identities = 525/555 (95%), Gaps = 8/555 (1%)
 Strand=Plus/Plus

Query  1    GAAGCATTAAGAGACCAGCCATGGCTTCTTCTTCTTCAATCTCATTCTCCTGCGCACCTT  60
            |||||||||||||| |||||||||   ||||||||||||||||||||||||| |||||||
Sbjct  56   GAAGCATTAAGAGAACAGCCATGG---CTTCTTCTTCAATCTCATTCTCCTGTGCACCTT  112

Query  61   CTTTGGCCACCTCACtcttctccacttcttcttcttcttcCCCAAGGCTGCTCTCCTCTA  120
            |||||||||||||||||||||||||  |  ||||||||||||||||||||||||||||||
Sbjct  113  CTTTGGCCACCTCACTCTTCTCCAC--C-ACTTCTTCTTCCCCAAGGCTGCTCTCCTCTA  169

Query  121  GATTTCTCGGAACCCGAAACTTAAAGCTTCAGATCCGACCTGCCAGACTCGGACCCTCCA  180
            |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct  170  GATTTCTCGGAACCCGAAACTTAAAGCTTCGGATCCGACCTGCCAGACTAGGACCCTCCA  229

Query  181  ATGGTTCAAGAACCACTTGCTGGTTCAAGTTCGGCAAGAACGGTGTCGATGCTGAAAATG  240
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  230  ATGGTTCAAGAACCACTTGCTGGTTCAAGTTCGGCAAGAATGGTGTCGATGCTGAAAATG  289

Query  241  CCGGTATCTATGGCAGTCAGTCTCGCGATGATTTCGACAGAGACGATGTTGAACAGTATT  300
            |||| ||||||||||| |||||||| |||||||||||||||||||| || ||||||||||
Sbjct  290  CCGGAATCTATGGCAGCCAGTCTCGAGATGATTTCGACAGAGACGACGTCGAACAGTATT  349

Query  301  TCAACTACATGGGTATGCTTGCGGTAGAAGGTACCTATTCAAAGATGGAAGCTCTTCTTA  360
            |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct  350  TCAACTACATGGGTATGCTTGCAGTAGAAGGAACCTATTCAAAGATGGAAGCTCTTCTTA  409

Query  361  GCCTAAACATTCACCCAGTCGATATCTTGTTGATGTTAGCCGCTACAGAAGGTGACAGAC  420
             |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  410  ACCTAAACATTCACCCAGTTGATATCTTGTTGATGTTAGCCGCTACAGAAGGTGACAGAC  469

Query  421  CTAAGATCGAGGAGCTGCTCAAAGCTGGTGCTGATTACTCAGTCAAGGATGCTGATGGAA  480
            |||||||||||||||| |||||||| ||||||||||| || |||||||| ||||||||||
Sbjct  470  CTAAGATCGAGGAGCTTCTCAAAGCCGGTGCTGATTATTCGGTCAAGGACGCTGATGGAA  529

Query  481  GAACCGCTATTGACAGAGCCAACAGTGAAGAGATCCGTGATTTGATCCTTGGCTACAACG  540
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct  530  GAACCGCTATCGACAGAGCCAACAGTGAAGAGATCCGTGATTTGATCCTTGGCTACT-CG  588

Query  541  -CTCAAAAGGCTTGA  554
             ||||||||||||||
Sbjct  589  ACTCAAAAGGCTTGA  603


> AT1G50910.1 | Symbols:  | unknown protein; Has 1105 Blast hits 
to 802 proteins in 217 species: Archae - 2; Bacteria - 177; 
Metazoa - 445; Fungi - 210; Plants - 58; Viruses - 6; Other 
Eukaryotes - 207 (source: NCBI BLink). | chr1:18866753-18869933 
REVERSE LENGTH=1927
Length=1927

 Score =  411 bits (222),  Expect = 5e-114
 Identities = 249/262 (95%), Gaps = 2/262 (1%)
 Strand=Plus/Minus

Query  294   CAGTATTTCAACTACATGGGTATGCTTGCGGTAGAAGGTACCTATTCAAAGATGGAAGCT  353
             ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  1926  CAGTATTTCAACTACATGGGTATGCTTGCAGTAGAAGGAACCTATTCAAAGATGGAAGCT  1867

Query  354   CTTCTTAGCCTAAACATTCACCCAGTCGATATCTTGTTGATGTTAGCCGCTACAGAAGGT  413
             ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1866  CTTCTTAACCTAAACATTCACCCAGTTGATATCTTGTTGATGTTAGCCGCTACAGAAGGT  1807

Query  414   GACAGACCTAAGATCGAGGAGCTGCTCAAAGCTGGTGCTGATTACTCAGTCAAGGATGCT  473
             ||||||||||||||||||||||| |||||||| ||||||||||| || |||||||| |||
Sbjct  1806  GACAGACCTAAGATCGAGGAGCTTCTCAAAGCCGGTGCTGATTATTCGGTCAAGGACGCT  1747

Query  474   GATGGAAGAACCGCTATTGACAGAGCCAACAGTGAAGAGATCCGTGATTTGATCCTTGGC  533
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1746  GATGGAAGAACCGCTATCGACAGAGCCAACAGTGAAGAGATCCGTGATTTGATCCTTGGC  1687

Query  534   TACAACG-CTCAAAAGGCTTGA  554
             |||  || ||||||||||||||
Sbjct  1686  TACT-CGACTCAAAAGGCTTGA  1666



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27578546703


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5