BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950836
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50910.1 | Symbols: | unknown protein; Has 1105 Blast hits ... 1700 0.0
AT1G50900.1 | Symbols: GDC1 | Ankyrin repeat family protein | c... 207 2e-52
> AT1G50910.1 | Symbols: | unknown protein; Has 1105 Blast hits
to 802 proteins in 217 species: Archae - 2; Bacteria - 177;
Metazoa - 445; Fungi - 210; Plants - 58; Viruses - 6; Other
Eukaryotes - 207 (source: NCBI BLink). | chr1:18866753-18869933
REVERSE LENGTH=1927
Length=1927
Score = 1700 bits (920), Expect = 0.0
Identities = 1081/1157 (93%), Gaps = 17/1157 (1%)
Strand=Plus/Plus
Query 1 AATTGTTTGAATAAAACTCCATGGATGATACACAAGTCAAAGCTCTGGAGGAGAAGCTGA 60
||||| ||||| ||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 75 AATTGCTTGAAGAAAACTCCATGGATGATACACAAGTTAAAGCTCTAGAAGAGAAGCTGA 134
Query 61 AGAGTCAGCTTGGCCAGCTTGAACTCGAGCAAGCGGTGTTCGAGAGAATGGTCTACAAGA 120
|||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 135 AGAGTCAGCTAAGTCAGCTTGAACTCGAGCAAGCGGTGTTCGAGAGAATGGTTTACAAGA 194
Query 121 ATAAGAACCAGCATCGGAGATGCTCTTATTTTCAATACCTTCTCAAGGTGAGAAGGGACT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 195 ATAAGAACCAGCATCGGAGATGCTCTTATTTTCAATACCTTCTCAAGGTGAGAAGAGAAT 254
Query 181 TGAGACTTTTAAGAACAGCAAACATGGAGAGTATGTTGAGACCTTGCTTTCATGTTATTT 240
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 255 TGAGACTTTTACGAACAGCAAACATGGAGGGTATGTTGAGACCTTGCTTTCATGTTATAT 314
Query 241 CTGGGAGAATAAGTAAACAGAAGATTCATGTTTTGGAGAGCTTGAAGTTGAAAAAATCTG 300
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 315 CTGGGAGAATAAGTAAACAGAAAATCCATGTTTTGGAGAGCTTGAAGTTGAAAAAATCTG 374
Query 301 ATACTGGGAAACCAAATATCTTGGAACGACTTCTTGGAGCTCTTCATTTACTCTCACAGA 360
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 375 ATACTGGGAAACCAAATATCTTGGAACGGCTTCTTGGAGCTCTTCGTTTACTCTCACAGA 434
Query 361 TGACTGAACCCATCTTGAAGGCAGCTAGTGGGATATCCACTCTACTAGCTCGTTCATTTT 420
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 435 TGACTGAACCCATCTTAAAGGCAGCTAGTGGGATATCTACTCTACTAGCTCGTTCATTCT 494
Query 421 TCATAGGATTTTCTGTGACATTTTTGGCCCTGCTTGCACGCCTCCGAGTGTTGATTCAAC 480
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | ||||
Sbjct 495 TCATAGGATTTTCTGTGACATTTTTGGCGCTGCTTGCACGTCTCCGAGTATTGGTCCAAC 554
Query 481 AAATATTACTTGATGCTGTTTCAGTTTTCAATTCGGTAACATCTACATCACTGAAGAAAC 540
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 555 AAATATTACTTGACGCTGTTTCAGTTTTCAATTCGGTGACATCTACATCACTGAAGAAAC 614
Query 541 AGTCTGTCAAGATAGCACAGGACGGGGTTGAG-TT--C------T---ATCCAAAGGAAG 588
|||||||||||||||||||||||||||||||| || | | ||||||||||||
Sbjct 615 AGTCTGTCAAGATAGCACAGGACGGGGTTGAGGTTTTCCGCGAGTTCTATCCAAAGGAAG 674
Query 589 AAGAGTGTATCACCTTATTGGATTGTGTATGGAAGACCGATAAATATGTTTTACTCGAGA 648
|||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 675 AAGAGTGTGTCACCTTATTGGATTGTGTATGGAAGACTGATAAATATGTCTTACTCGAGA 734
Query 649 CATTGCAGAACTGTGAGAATAGTAAACCTATGGAGGAAATTTTCTCAGAAGATGCTACTA 708
|||||||||||| ||||||||||||||||||||| ||| | |||||||||||| |||||
Sbjct 735 CATTGCAGAACTCTGAGAATAGTAAACCTATGGAAAAAAATGTCTCAGAAGATGTTACTA 794
Query 709 TTAGGGATTCTTTGGTACAGTATCAAACATCTGTTTCTTCTCTCGGGGAAGATCTCTCTC 768
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 795 CTAGGGACTCTTTGGTACAGTATCAAACATCTGTTTCTTCTCTCGCGGAAGATCTCTCTC 854
Query 769 CTTTGCTT-GAAGTAGACAACAGTGGTGTTACTGTGAGAGAAAGTTCGACTCCCATTGCT 827
|||||||| || | |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 855 CTTTGCTTCGA-GCAGACAACAGTGGTGCTACTGTGAGAGAAAGTTCGACTCCCATTGAT 913
Query 828 GAAGCAGCTTCGTCCAAGACTAACATTGGGTTGCAACCAGAAGATTCAGAAAAACCAGAA 887
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 914 GAAGCAGCTTCGTCCAAGACTAACATTGGGTTGCAACCAGAGGATTCAGAAAACCCAGAA 973
Query 888 GATGTGACAACTAGGGACTGTTCAGTTCAGTATGAAACGTTTGTTTCTCCTCTAGGAGAA 947
|||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 974 GATGCGACAACTAGGGACTGTTCGGTTCAGTATGAAACGTTTGTTTCTCCTCTTGGAGAA 1033
Query 948 GATCTCTCTCCTTTGCGTGAAGCCGACAACAGTGGTGTTACCATGAGAGAAAGTTCTACT 1007
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1034 GATCTCTCTCCTTTGCTTGAAGCCGACAACAGTGGTGTTACTTTGAGAGAAAGTTCTACT 1093
Query 1008 CCCATTGTCGAAGCAGCTTCTTCCAAGACTAACAATGCATTGCAACCAGAAGATTCAGAA 1067
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1094 CCCATTGCCGAAGCAGCTTCTTCCAAGACTAACAATGCATCGCAACCAGAAGATTCAGAA 1153
Query 1068 AATCC-AGAAGATGCTACAACTAGGGATTGTTCAATTCAGTGCCAAACGTTTGCTTCTCC 1126
|| || ||||||| ||||||||| ||||||||||||||||| |||||||||| ||||||
Sbjct 1154 AA-CCTAGAAGATACTACAACTAAGGATTGTTCAATTCAGTATCAAACGTTTGTTTCTCC 1212
Query 1127 TCTCGGAGAAGAT-TCa 1142
||| ||||||||| |||
Sbjct 1213 TCTTGGAGAAGATATCA 1229
Score = 403 bits (218), Expect = 2e-111
Identities = 254/271 (94%), Gaps = 3/271 (1%)
Strand=Plus/Plus
Query 1144 aaaaaGTAGAAGATGAATCTACAAATCCCGTGAGGC-CGACAAAAATTAACAGAGACACA 1202
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 1350 AAAAAGTAGAAGATGAATCTACAAATCCCGTGA-GCTCGGCAAAAATTAACAGAGACACA 1408
Query 1203 GTAAAACCAAGATGCAGAGCAACCAAGGTAGCGTTTCTACCCGTGAAAAGACCTTCATCT 1262
||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1409 GTAAAACCAAGATTCAGAGCAACCAAGGTAGCGTTTCTACCTGTAAAAAGACCTTCATCT 1468
Query 1263 GCAATAATGCCTAACACCATAGAAGAACCCTTAAGGAAGAAACAAGAAACTGGCGAGAAA 1322
||||||| ||| |||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct 1469 GCAATAACGCCAAACACCATAGAACAACCCCCATTGAAGAAACAAGAAACTGGCGAGAAA 1528
Query 1323 GACGAAAAGGAAAAAGATGGATTTTATAATCTACTCATCCGCGGAACACAGAAAGACAGT 1382
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 GACAAAAAGGAAGAAGATGGATTTTATAATCTACTCATCCGCGGAACACAGAAAGACAGT 1588
Query 1383 TTGTTTTAGCAAACA-AAACATTTCAAAACT 1412
||||| ||||||||| |||||||||||||||
Sbjct 1589 TTGTTCTAGCAAACACAAACATTTCAAAACT 1619
> AT1G50900.1 | Symbols: GDC1 | Ankyrin repeat family protein |
chr1:18866197-18867204 FORWARD LENGTH=793
Length=793
Score = 207 bits (112), Expect = 2e-52
Identities = 133/143 (93%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 1271 GCCTAACACCATAGAAGAACCCTTAAGGAAGAAACAAGAAACTGGCGAGAAAGACGAAAA 1330
||| |||||||||||| ||||| | |||||||||||||||||||||||||||| ||||
Sbjct 792 GCCAAACACCATAGAACAACCCCCATTGAAGAAACAAGAAACTGGCGAGAAAGACAAAAA 733
Query 1331 GGAAAAAGATGGATTTTATAATCTACTCATCCGCGGAACACAGAAAGACAGTTTGTTTTA 1390
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 732 GGAAGAAGATGGATTTTATAATCTACTCATCCGCGGAACACAGAAAGACAGTTTGTTCTA 673
Query 1391 GCAAACA-AAACATTTCAAAACT 1412
||||||| |||||||||||||||
Sbjct 672 GCAAACACAAACATTTCAAAACT 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69577955370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5