BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950838
Length=694
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60860.1 | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1... 1051 0.0
AT3G15060.1 | Symbols: AtRABA1g, RABA1g | RAB GTPase homolog A1... 691 0.0
> AT5G60860.1 | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog
A1F | chr5:24484622-24485705 FORWARD LENGTH=922
Length=922
Score = 1051 bits (569), Expect = 0.0
Identities = 645/683 (94%), Gaps = 0/683 (0%)
Strand=Plus/Plus
Query 12 AACCTCACAATGGCGGCATATAGAGCCGACGAAGACTACGATTACCTCTTCAAGGTTGTG 71
|||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 120 AACCTCACAATGGCCGCATATAGAGCCGACGACGAGTACGATTACCTCTTCAAAGTTGTG 179
Query 72 TTAATTGGAGATTCCGGTGTCGGAAAATCCAACCTCCTTTCTCGATTCACGCGAAACGAG 131
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 180 TTAATTGGAGACTCCGGCGTTGGAAAATCCAACCTCCTTTCTCGATTCACGCGCAACGAG 239
Query 132 TTCAGTCTCGAATCTAAATCCACGATCGGTGTCGAATTCGCCACTCGTAGCATCCATGTC 191
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 240 TTCAGTCTCGAATCTAAATCCACGATCGGTGTAGAATTCGCCACTCGTAGCATCCATGTC 299
Query 192 GATGATAAGATCGTCAAAGCCCAGATTTGGGATACCGCCGGCCAAGAGAGATATCGAGCA 251
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 300 GATGATAAGATCGTCAAAGCTCAGATTTGGGATACCGCTGGCCAAGAAAGATATCGAGCA 359
Query 252 ATCACAAGTGCATACTACAGAGGAGCTGTAGGAGCATTGCTTGTGTACGATGTCACAAGA 311
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 ATCACAAGTGCATATTACAGAGGAGCTGTAGGAGCGTTGCTTGTGTACGATGTCACAAGA 419
Query 312 CATGTGACATTTGAGAACCTTGAGAGATGGTTAAAGGAGCTTCGAGATCATACAGATTCC 371
|||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| ||
Sbjct 420 CATGTGACGTTTGAGAACGTTGAAAGATGGTTAAAGGAGCTTCGAGATCATACAGATGCC 479
Query 372 AACATTGTCATCATGTTTGTCGGGAACAAAGCCGATCTCCGTCACCTACGAGCTGTTTCC 431
|| || ||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 480 AATATCGTCATCATGTTCGTTGGGAACAAAGCGGATCTCCGTCACCTACGAGCTGTTTCG 539
Query 432 ACTGAAGACGCTAAGGCTTTTGCGGAGAGAGAGAACACTTTCTTCATGGAGACATCTGCT 491
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 540 ACTGAAGACGCTAAGGCTTTCGCTGAGAGAGAGAACACTTTCTTCATGGAGACATCAGCT 599
Query 492 CTCGAATCCATGAACGTCGAGAATGCTTTCACTGAAGTGCTTTCTCAGATTTACCGTGTG 551
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 600 CTCGAATCGATGAACGTCGAGAATGCTTTCACTGAAGTACTTTCTCAGATTTACCGTGTG 659
Query 552 GTTAGCCGGAAAGCGTTGGATATAGGAGATGACCCGGCTGCTCTTCCCAAAGGACAGACC 611
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 660 GTTAGCCGGAAAGCGTTGGATATAGGAGACGACCCGGCTGCTCTTCCCAAAGGACAGACC 719
Query 612 ATCAACGTTGGGTCTAAAGACGATGTCTCTGCCGTTAAAAAGGTTGGTTGCTGCTCAAAT 671
||||| || || || ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 720 ATCAATGTCGGATCGAAAGACGATGTCTCTGCGGTGAAAAAGGTTGGTTGCTGCTCAAAT 779
Query 672 TGATGCTACTTTCGACTTTCAAG 694
||||| ||| |||||||||||||
Sbjct 780 TGATGGTACGTTCGACTTTCAAG 802
> AT3G15060.1 | Symbols: AtRABA1g, RABA1g | RAB GTPase homolog
A1G | chr3:5069166-5070200 FORWARD LENGTH=902
Length=902
Score = 691 bits (374), Expect = 0.0
Identities = 564/658 (86%), Gaps = 4/658 (1%)
Strand=Plus/Plus
Query 20 AATGGCGGCATATAGAGCCGACGAAGACTACGATTACCTCTTCAAGGTTGTGTTAATTGG 79
||||||||| |||||||| ||||| || ||||||| ||||| |||||| || ||||| ||
Sbjct 73 AATGGCGGCGTATAGAGCTGACGATGATTACGATTTCCTCTACAAGGTGGTATTAATCGG 132
Query 80 AGATTCCGGTGTCGGAAAATCCAACCTCCTTTCTCGATTCACGCGAAACGAGTTCAGTCT 139
|||||||| ||||| |||||||| || ||||||||||||||||| ||||||||||| ||
Sbjct 133 TGATTCCGGCGTCGGTAAATCCAATCTGCTTTCTCGATTCACGCGCAACGAGTTCAGCCT 192
Query 140 CGAATCTAAATCCACGATCGGTGTCGAATTCGCCACTCGTAGCATCCATGTCGATGATAA 199
||| ||||||||||| |||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct 193 CGAGTCTAAATCCACCATCGGTGTCGAATTCGCCACCCGAAGCATTCATGTCGATGAAAA 252
Query 200 GATCGTCAAAGCCCAGATTTGGGATACCGCCGGCCAAGAGAGATATCGAGCAATCACAAG 259
|||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 253 AATCGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAGAGATACCGAGCAATCACAAG 312
Query 260 TGCATACTA-CAGAGGAGCTGTAGGAGCATTGCTTGTGTACGATGTCACAAGACATGTGA 318
|||||||| | |||||||||| || || |||||||| || ||||| ||| | |||||||
Sbjct 313 CGCATACTATC-GAGGAGCTGTTGGGGCTTTGCTTGTTTATGATGTTACACGGCATGTGA 371
Query 319 CATTTGAGAACCTTGAGAGATGGTTAAAGGAGCTTCGAGATCATACAGATTCCAACATTG 378
||||||||||| ||||||||||||| ||||||||| |||| || ||||| |||||||||
Sbjct 372 CATTTGAGAACGTTGAGAGATGGTTGAAGGAGCTTAGAGACCACACAGAGGCCAACATTG 431
Query 379 TCATCATGTTTGTCGGGAACAAAGCCGATCTCCGTCACCTACGAGCTGTTTCCACTGAAG 438
| |||||| |||| ||||| ||||| ||||| ||||||||| |||||||||| |||||||
Sbjct 432 TGATCATGCTTGTTGGGAATAAAGCGGATCTACGTCACCTAAGAGCTGTTTCAACTGAAG 491
Query 439 ACGCTAAGGCTTTTGCGGAGAGAGAGAACACTTTCTTCATGGAGACATCTGCTCTCGAAT 498
| ||||| || ||||| |||||||||||||| ||||| |||||||||||||| || |||
Sbjct 492 ATGCTAAAGCCTTTGCAGAGAGAGAGAACACATTCTTTATGGAGACATCTGCACTTGAAG 551
Query 499 CCATGAACGTCGAGAATGCTTTCACTGAAGTGCTTTCTCAGATTTACCGTGTGGTTAGCC 558
| ||||||| ||||||||||||||||||||||||||||| || |||||||| | |||
Sbjct 552 CTTTGAACGTTGAGAATGCTTTCACTGAAGTGCTTTCTCAAATATACCGTGTTGCAAGCA 611
Query 559 GGAAAGCGTTGGATATAGGAGATGACC-CGGCTGCTCTTCCCAAAGGACAGACCATCAAC 617
||| ||||||||||| || ||||| | | || ||||||| |||||||| | || ||
Sbjct 612 AGAAGGCGTTGGATATTGGTGATGATCACA-CTACTCTTCCTAAAGGACAAAGTATTAAT 670
Query 618 GTTGGGTCTAAAGACGATGTCTCTGCCGTTAAAAAGGTTGGTTGCTGCTCAAATTGAT 675
||||||||||| || ||||| |||| ||||| |||||||| |||||||||| |||||
Sbjct 671 GTTGGGTCTAAGGATGATGTTTCTGAGGTTAAGAAGGTTGGATGCTGCTCAAGTTGAT 728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33606644343
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5