BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950840
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60880.1 | Symbols: BASL | breaking of asymmetry in the stom... 1293 0.0
> AT5G60880.1 | Symbols: BASL | breaking of asymmetry in the stomatal
lineage | chr5:24488289-24489778 REVERSE LENGTH=1128
Length=1128
Score = 1293 bits (700), Expect = 0.0
Identities = 790/832 (95%), Gaps = 12/832 (1%)
Strand=Plus/Plus
Query 8 aaaCATAACAGCCATGGCTTCACAGTGGACAATACCAAAACTTGTCACTTGGAGAGTCAA 67
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 AAACATAACAGCCATGGCTTCACAGTGGACAATACCAAAACTTGTCACTTGGAGAGTCAG 122
Query 68 AGATTGGGCTTCCTGTTTCTTGGCTTGCAAGATTCCTCTAGACGTAGATGAAGATGGAGT 127
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 123 AGATTGGGCTTCTTGTTTCTTGGCTTGCAAGATTCCTCTAGACGGAGATGAAGATGGAGC 182
Query 128 TAATAACAATGGAAACACTACGAACAACAATAATCTAACGTTCAAGAGGATTAAGAGGAA 187
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 183 TAATAATAATGGAAACACTACGAACAACAATAATCTAACGTTCAAAAGGATTAAGAGGAA 242
Query 188 GA-TAAAGAGTACTAAGAAGAAGAGATCAGAGAGGAAACTCAGTCTAAGCCCACCGGGTA 246
|| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 243 GATTAAA-AGTACTAAGAAGAAGAGATCAGAGAGGAAACTCAGCCTAAGCCCACCAGGTA 301
Query 247 CACGTCATCATCATCTTCATCTAAGAAGCAGTAGCGTTTCTCCGACGACGTCGGCGTCTC 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 302 CACGTCATCATCATCTTCATCTAAGAAGCAGTAGCGTTTCTCCGACGACGTCGGGGTCTC 361
Query 307 AACACCGGCGCTTGAGCTGGCCTCAGCCACCTGTCTCAGAAGAATCTGGTTTCATTGTCT 366
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 362 AGCACCGGCGCTTGAGCTGGCCTCAGCCCCCTGTCTCAGAAGAATCTGGATTCATTGTCT 421
Query 367 TCTGCTTCGATCGCGAAGATGGAGGATTT-GATGTGGTTAAAGAGGGTAAACAAGAGAGG 425
|||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| |
Sbjct 422 TCTGCTTCGATCGCGAAGATGGTGG-TTTCGATGTGGTTAAAGAGGGTAAACAAGAGAAG 480
Query 426 AAAGAGACCGAATTGTCGTCGGAAAAGTCACCGAGGACGGTGAATCGTAAGCTTATATAT 485
|||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAAGAGACGGAATCGTCCTCGGAAAAGTCACCGAGGACGGTGAATCGTAAGCTTATATAT 540
Query 486 GGAGGAGACCAAGGAGTAGGAGAAACAGAAAAGAATAAGTCGCCGGAGAATAAAGGAACA 545
||||||||||||||||||| |||||| |||||||| |||||||||| |||||| |||
Sbjct 541 ---GGAGACCAAGGAGTAGGAGGAACAGAGAAGAATAACTCGCCGGAGACTAAAGGGACA 597
Query 546 GAACAAGATCAGAACGATAACACTTCATGTCAAGAAACTAAAGATGTCTCTTGTGATGTT 605
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 598 GAACAAGATCAGAACGATAACACTTCATGTCAAGGAACTAAAGATGTCTCTAGTGATGTT 657
Query 606 ACA-CAAGAAACCgaagaagaagaagaagaCATTGATGCCTCTGATAAATCTAGCGGGTC 664
||| ||| |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ACAGAAAG-AACC--A-AAGAAGAAGAAGACATTGATGCCTCTGATAAATCTAGCGGGTC 713
Query 665 TAGTCACTCAGATGAAGGAAGGGGATCTTTTGCATTTCCCATATTAGGAGTAGAGTGGAT 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TAGTCACTCAGATGAAGGAAGGGGATCTTTTGCATTTCCCATATTAGGAGTAGAGTGGAT 773
Query 725 GGGGAGCCCTGTTAAGATGCCTGAATCAGATGACTTGTCTCCCAAGAAACAAAAGCCGGT 784
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 774 GGGGAGTCCTGCTAAGATGCCTGAATCAGATGACTTGTCTCCCAAGAAACAAAAGCCAGT 833
Query 785 TGCTTTAGGGTTCCAATGCTGTAGATTCTGAAAAAGATAACATTCTACAAGT 836
|||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 834 TGCTTTAGGGTTCCAATGTTGTAGATTCTGAAAAAGATAACATCCTACAAGT 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40739893217
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5