BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950843
Length=869
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60910.1 | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:245024... 1498 0.0
AT1G69120.1 | Symbols: AP1, AGL7 | K-box region and MADS-box tr... 231 6e-60
AT1G26310.1 | Symbols: CAL, CAL1, AGL10 | K-box region and MADS... 187 1e-46
AT2G03710.1 | Symbols: SEP4, AGL3 | K-box region and MADS-box t... 161 8e-39
AT1G24260.2 | Symbols: SEP3, AGL9 | K-box region and MADS-box t... 121 1e-26
> AT5G60910.1 | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502482-24506143
REVERSE LENGTH=1113
Length=1113
Score = 1498 bits (811), Expect = 0.0
Identities = 853/873 (98%), Gaps = 4/873 (0%)
Strand=Plus/Plus
Query 1 CACATTCATCAACACAAAAGATACCCagagagacataagaaagaaagagagagagagaTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 CACATTCATCAACACAAAAGATACCCAGAGAGACATAAGAAAGAAAGAGAGAGAGAGATA 67
Query 61 CTCTGGTCATTTCAGGGTTGTCGTTTCTCTCTCTTGTTCTTGAGAGTTTG-A-AGAGAGA 118
|| |||||||||||||||||||||||||||||||||||||||||| |||| | |||||||
Sbjct 68 CTTTGGTCATTTCAGGGTTGTCGTTTCTCTCTCTTGTTCTTGAGATTTTGAAGAGAGAGA 127
Query 119 G--ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTT 176
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 GATATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTT 187
Query 177 ACTTTCTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCTCATGAGATCTCTGTTCTCTGC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 ACTTTCTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCTCATGAGATCTCTGTTCTCTGC 247
Query 237 GATGCTGAGGTTGCTCTCATCGTCTTCTCTTCCAAAGGCAAACTCTTCGAATATTCCACC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 GATGCTGAGGTTGCTCTCATCGTCTTCTCTTCCAAAGGCAAACTCTTCGAATATTCCACC 307
Query 297 GACTCTTGCATGGAGAGGATACTTGAACGCTATGATCGCTATTTATATTCAGACAAACAA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GACTCTTGCATGGAGAGGATACTTGAACGCTATGATCGCTATTTATATTCAGACAAACAA 367
Query 357 CTTGTTGGCCGAGACGTCTCACAAAGTGAAAATTGGGTTCTAGAACATGCTAAGCTCAAG 416
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 CTTGTTGGCCGAGACGTTTCACAAAGTGAAAATTGGGTTCTAGAACATGCTAAGCTCAAG 427
Query 417 GCAAGAGTTGAAGTACTTGAGAAGAACAAAAGGAATTTTATGGGGGAAGATCTTGATTCG 476
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GCAAGAGTTGAGGTACTTGAGAAGAACAAAAGGAATTTTATGGGGGAAGATCTTGATTCG 487
Query 477 CTGAGCTTGAAGGAGCTTCAAAGCTTGGAGCATCAGCTCGATGCAGCTATCAAGAGCATT 536
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TTGAGCTTGAAGGAGCTCCAAAGCTTGGAGCATCAGCTCGATGCAGCTATCAAGAGCATT 547
Query 537 AGGTCAAGAAAGAACCAAGCTATGTTCGAATCCATATCTGCGCTCCAGAAGAAGGATAAG 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 AGGTCAAGAAAGAACCAAGCTATGTTCGAATCCATATCTGCGCTCCAGAAGAAGGATAAA 607
Query 597 GCCTTGCAAGATCACAATAATTCGCTTCTCAAAAAGATTAAGGAGAGGGAGAAGAAAACG 656
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GCCTTGCAAGATCACAACAATTCGCTTCTCAAAAAGATTAAGGAGAGGGAGAAGAAAACG 667
Query 657 GGTCAACAAGAAGGACAATTAGTCCAATGCTCCAACTCTTCTTCAGTTCTTCTGCCCCAA 716
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 668 GGTCAGCAAGAAGGACAATTAGTCCAATGCTCCAACTCTTCTTCAGTTCTTCTGCCTCAA 727
Query 717 TACTGCGTAACCTCCTCCAGAGATGGCTTTGTTGAGAGAGTTGGGGGAGAGAACGGCGGT 776
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 728 TACTGCGTAACCTCCTCCAGAGATGGCTTTGTGGAGAGAGTTGGGGGAGAGAACGGTGGT 787
Query 777 GCATCGTCGTTGACGGAACCAAACTCTCTTCTTCCGGCTTGGATGCTACGTCCTACCACT 836
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 788 GCATCGTCGTTGACGGAACCAAACTCTCTGCTTCCGGCTTGGATGTTACGTCCTACCACT 847
Query 837 ACGAATGAGTAGAACTATCTCACTCTATATAAT 869
||||| |||||||||||||||||||| ||||||
Sbjct 848 ACGAACGAGTAGAACTATCTCACTCTTTATAAT 880
> AT1G69120.1 | Symbols: AP1, AGL7 | K-box region and MADS-box
transcription factor family protein | chr1:25982330-25986313
REVERSE LENGTH=1228
Length=1228
Score = 231 bits (125), Expect = 6e-60
Identities = 188/217 (87%), Gaps = 10/217 (5%)
Strand=Plus/Plus
Query 120 ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTTACT 179
|||||||| ||||||||||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 212 ATGGGAAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACA 271
Query 180 TTCTC-AAAGAGAAG-GTCTGGT-TTGCTCAAGAAAGCTCATGAGATCTCTGTTCTCTGC 236
||||| ||| ||||| | ||||| || | |||||||||||||||||||||||||||||
Sbjct 272 TTCTCGAAA-AGAAGAG-CTGGTCTTT-TGAAGAAAGCTCATGAGATCTCTGTTCTCTGT 328
Query 237 GATGCTGAGGTTGCTCTCATCGTCTTCTCTTCCA-AAGGCAAA-CTCTTCGAATATTCCA 294
|||||||| |||||||| | |||||||| ||| |||| ||| ||||||||||| ||||
Sbjct 329 GATGCTGAAGTTGCTCTTGTTGTCTTCTC--CCATAAGGGAAAACTCTTCGAATACTCCA 386
Query 295 CCGACTCTTGCATGGAGAGGATACTTGAACGCTATGA 331
| || ||||| ||||||| ||||||||||||||||||
Sbjct 387 CTGATTCTTGTATGGAGAAGATACTTGAACGCTATGA 423
> AT1G26310.1 | Symbols: CAL, CAL1, AGL10 | K-box region and MADS-box
transcription factor family protein | chr1:9100153-9103603
REVERSE LENGTH=1038
Length=1038
Score = 187 bits (101), Expect = 1e-46
Identities = 182/220 (83%), Gaps = 10/220 (5%)
Strand=Plus/Plus
Query 114 AGAGAGATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAA 173
||||| |||||||| ||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 88 AGAGAAATGGGAAGGGGTAGGGTTGAATTGAAGAGGATAGAGAACAAGATCAATAGACAA 147
Query 174 GTTACTTTCTC-AAAGAGAAGGTCTGGT-TTGCTCAAGAAAGCTCATGAGATCTCTGTTC 231
|| || ||||| ||| ||||| ||||| || | ||||||||||| |||||||||||||
Sbjct 148 GTGACATTCTCGAAA-AGAAGAACTGGTCTTT-TGAAGAAAGCTCAGGAGATCTCTGTTC 205
Query 232 TCTGCGATGCTGAGGTTGCTCTCATCGTCTTCTCTTCCA-AAGG-CAAACTCTTCGAATA 289
| || ||||| |||||| | || || |||||||| ||| |||| |||| | ||||| ||
Sbjct 206 TTTGTGATGCCGAGGTTTCCCTTATTGTCTTCTC--CCATAAGGGCAAATTGTTCGAGTA 263
Query 290 TTCCACCGACTCTTGCATGGAGA-GGATACTTGAACGCTA 328
||| | || ||||||||||||| || |||| ||||||||
Sbjct 264 CTCCTCTGAATCTTGCATGGAGAAGG-TACTAGAACGCTA 302
> AT2G03710.1 | Symbols: SEP4, AGL3 | K-box region and MADS-box
transcription factor family protein | chr2:1129268-1131838
FORWARD LENGTH=1341
Length=1341
Score = 161 bits (87), Expect = 8e-39
Identities = 151/181 (83%), Gaps = 7/181 (4%)
Strand=Plus/Plus
Query 111 AAGAGAGAGATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGG 170
||||||| |||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 347 AAGAGAG-GATGGGAAGAGGGAAAGTTGAGCTGAAGAGGATAGAGAACAAGATCAATAGA 405
Query 171 CAAGTTACTTTCT-CAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCTCATGAGATCTCTGT 229
||||||||||| | |||||||||| ||||||||||||||| ||| ||||| | |||||
Sbjct 406 CAAGTTACTTT-TGCAAAGAGAAGAAATGGTTTGCTCAAGAAGGCTTATGAGCTTTCTGT 464
Query 230 TCTCTGCGATGCTGAGGTTGCTCT-CATCGTCTTCTCTT-CCAAAGGCAAACTCTTCGAA 287
|| || ||||||||| ||||||| | || | |||||| || ||||| |||| ||||
Sbjct 465 CCTTTGTGATGCTGAGATTGCTCTTC-TCATTTTCTCTAACCGT-GGCAAGCTCTACGAA 522
Query 288 T 288
|
Sbjct 523 T 523
> AT1G24260.2 | Symbols: SEP3, AGL9 | K-box region and MADS-box
transcription factor family protein | chr1:8593642-8596098
REVERSE LENGTH=1140
Length=1140
Score = 121 bits (65), Expect = 1e-26
Identities = 122/149 (82%), Gaps = 6/149 (4%)
Strand=Plus/Plus
Query 120 ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTTAC- 178
||||||||||| || || | |||||||||||||||||||||||||||||||||| ||
Sbjct 237 ATGGGAAGAGGGAGAGTAGAATTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTGACG 296
Query 179 TTTCTCAAAGAGAAGGTCTGGT-TTGCTCAAGAAAGC-TCATGAGATCTCTGTTCTCTGC 236
||| ||||||||||| |||| || | |||||||| | | ||| | || ||||| ||
Sbjct 297 TTTG-CAAAGAGAAGGAATGGTCTTT-TGAAGAAAGCAT-ACGAGCTTTCAGTTCTATGT 353
Query 237 GATGCTGAGGTTGCTCTCATCGTCTTCTC 265
||||| || |||||||||||| |||||||
Sbjct 354 GATGCAGAAGTTGCTCTCATCATCTTCTC 382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42397620068
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5