BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950851
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 2366 0.0
> AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:24546430-24549339 REVERSE LENGTH=1733
Length=1733
Score = 2366 bits (1281), Expect = 0.0
Identities = 1359/1397 (97%), Gaps = 3/1397 (0%)
Strand=Plus/Plus
Query 15 TGAAAAATGGAGGAGGAGAACGAAGTGGTGAAGACGTTTGCGGAACTTGGTGTGCGTGAG 74
|||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 186 TGAAAAATGGAGGAAGAGAACGAAGTAGTGAAGACGTTTGCAGAGCTTGGTGTGCGTGAG 245
Query 75 GAGCTTGTTAAAGCTTGCGAGAGATTGGGATGGAAGAACCCTTCCAAAATTCAAGCCGAA 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GAGCTTGTTAAAGCTTGCGAGAGATTGGGATGGAAGAACCCTTCCAAAATTCAAGCCGAA 305
Query 135 GCCCTTCCTTTTGCTCTTGAAGGGAAAGATGTAATTGGACTTGCGCAAACCGGTTCTGGT 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 GCCCTTCCTTTTGCTCTTGAAGGGAAAGATGTAATTGGACTTGCGCAAACCGGTTCTGGT 365
Query 195 AAAACCGGAGCCTTTGCAATTCCTATATTGCAAGCACTTCTTGAGTATGTTTATGATTCT 254
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 366 AAAACCGGAGCTTTTGCAATTCCTATATTGCAAGCACTACTTGAGTATGTTTATGATTCT 425
Query 255 GAGCCTAAGAAAGGACGTAGACCTGATCCTGCCTTCTTCGCTTGTGTTTTATCTCCAACT 314
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 426 GAGCCTAAGAAAGGACGTAGACCGGATCCTGCTTTCTTCGCTTGTGTTTTATCTCCAACT 485
Query 315 CGAGAGCTTGCAATCCAGATTGCTGAGCAGTTTGAAGCTCTAGGAGCTGATATAAGTCTT 374
||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 486 CGAGAACTTGCAATCCAGATTGCTGAACAGTTTGAAGCTCTTGGTGCTGATATAAGTCTT 545
Query 375 AGGTGTGCTGTGCTTGTTGGAGGTATAGACAGGATGCAACAAACTATTGCTCTTGGGAAA 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 AGGTGTGCTGTGCTTGTTGGAGGTATAGACAGGATGCAACAAACTATTGCTCTTGGGAAA 605
Query 435 CGGCCTCATGTTATTGTTGCAACACCTGGTCGTCTTTGGGATCATATGTCTGATACAAAA 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 CGGCCTCATGTTATTGTTGCAACACCTGGTCGTCTTTGGGATCATATGTCTGATACAAAA 665
Query 495 GGCTTTTCTCTGAAATCTTTGAAATATCTGGTTCTTGATGAAGCAGATAGACTGCTGAAT 554
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 666 GGCTTTTCTCTGAAATCATTGAAATATCTGGTTCTTGATGAAGCAGATAGACTGTTGAAT 725
Query 555 GAAGATTTTGAGAAATCTCTTAACCAGATTTTGGAAGAGATCCCTCGTGAACGTAAAACA 614
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 726 GAAGATTTTGAGAAATCTCTTAACCAGATTTTGGAAGAGATCCCTCTTGAGCGGAAAACA 785
Query 615 TTTCTTTTTTCAGCAACTATGACTAAAAAGGTTCGAAAACTTCAAAGGGCATGTTTGAGG 674
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TTTCTTTTTTCAGCGACTATGACTAAAAAGGTTCGAAAACTTCAAAGGGCATGTTTGAGG 845
Query 675 AATCCTGTGAAGATTGAAGCTGCCTCCAAATATTCCACAGTCGATACTCTTAAGCAGCAG 734
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 846 AATCCTGTGAAGATTGAAGCTGCCTCCAAATATTCCACTGTCGATACTCTTAAGCAGCAG 905
Query 735 TATCGGTTTGTTGCCGCTAAATACAAGGATTGCTATCTGGTATACATTCTGAGTGAAATG 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 TATCGGTTTGTTGCCGCTAAATACAAGGATTGCTATCTGGTATACATTCTGAGTGAAATG 965
Query 795 CCTGAATCAACATCAATGATTTTCACCCGAACATGTGATGGTACTCGCTTTCTGGCTTTG 854
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 CCTGAATCAACATCTATGATTTTCACCCGAACATGTGATGGTACTCGCTTTCTGGCTTTG 1025
Query 855 GTGCTTCGGAGCCTTGGTTTTAGAGCCATTCCTATCAGTGGTCAAATGACACAGTCAAAG 914
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1026 GTGCTTCGGAGCCTTGGTTTTAGAGCTATTCCTATCAGTGGTCAAATGACTCAGTCAAAG 1085
Query 915 AGACTGGGAGCTTTGAATAAGTTCAAAGCAGGGGAATGTAATATCTTGGTTTGTACCGAT 974
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 AGACTGGGAGCTTTAAATAAGTTCAAAGCAGGGGAATGTAATATCTTGGTTTGTACCGAT 1145
Query 975 GTGGCTAGTAGAGGGCTCGATATCCCATCGGTTGATGTGGTTATCAATTATGATATTCCC 1034
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1146 GTGGCTAGTAGAGGGCTCGATATCCCATCAGTTGATGTGGTTATCAATTATGATATTCCC 1205
Query 1035 ACAAATTCAAAGGATTACATCCACAGAGTAGGAAGAACCGCTCGTGCTGGACGTTCTGGT 1094
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1206 ACAAATTCAAAGGATTACATCCATAGAGTAGGAAGAACCGCTCGTGCTGGACGTTCTGGT 1265
Query 1095 GTCGGGATATCACTTGTAAACCAGTATGAGCTCGAGTGGTATATACAAATAGAAAAACTC 1154
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1266 GTTGGGATATCACTTGTAAACCAGTATGAGCTCGAATGGTATATACAAATAGAAAAACTC 1325
Query 1155 ATTGGCAAGAAACTACCTGAATATCCAGCTGAGGAAGATGAAGTCTTGTCATTGTTGGAG 1214
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1326 ATTGGCAAGAAACTACCTGAATATCCCGCTGAGGAAGATGAAGTCTTGTCATTGTTGGAG 1385
Query 1215 AGAGTTGCAGAAGCGAAAAAGTTATCTGCAATGAATATGAAAGAATCAGGAGGTAGGAAG 1274
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1386 AGAGTTGCAGAAGCGAAAAAGCTATCTGCAATGAATATGAAAGAATCAGGAGGTAGGAAG 1445
Query 1275 AGAAGGGGAGAAGATGATGAAGAGAGTGAGAGGTTCTTGGGAGGTAACAAGGATAGAGGC 1334
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1446 AGAAGGGGAGAAGATGATGAAGAAAGTGAGAGGTTCTTGGGAGGTAACAAGGACAGAGGC 1505
Query 1335 AACAAGGACAGAGGT---AACAAAGACAAGAAGTCTTCTAAGAAGTTCAAACGATAAAAT 1391
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 AACAAGGAAAGAGGTGGTAACAAAGACAAGAAGTCTTCTAAGAAGTTCAAACGATAAAAT 1565
Query 1392 GGCTCTGTTGTTATTGT 1408
|||||||| ||| |||
Sbjct 1566 AGCTCTGTTTTTACTGT 1582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69377153190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5