BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950854
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61010.1 | Symbols: ATEXO70E2, EXO70E2 | exocyst subunit exo... 3007 0.0
> AT5G61010.1 | Symbols: ATEXO70E2, EXO70E2 | exocyst subunit exo70
family protein E2 | chr5:24553898-24556749 FORWARD LENGTH=2852
Length=2852
Score = 3007 bits (1628), Expect = 0.0
Identities = 1857/1969 (94%), Gaps = 10/1969 (1%)
Strand=Plus/Plus
Query 1 CTCTAGTCTTTTGGTTTGGGTTATGGCAGAGTTTGAATCCAAGCTTCCTGTTTCCGGGGG 60
|||||||| |||||||| |||||||||||||||||| |||||| |||||||||||||
Sbjct 694 CTCTAGTC-TTTGGTTTTGGTTATGGCAGAGTTTGATTCCAAGGTTCCTGTTTCCGGAAT 752
Query 61 GAAAAATCATGTCTTTGAGGCATGTCACCATGTTGTTAAGGCACTGAGGGCATCTGATAA 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 GAACAATCATGTCTTTGAGGCATGTCACCATGTTGTTAAGGCACTGAGGGCATCTGATAA 812
Query 121 CAACCTGGATGCCAACTTGAGAAAGCTCCTAAGTGACCTAGAG-TCGCATTTGTCAACAT 179
||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 813 CAACCTGGATGCCAATTTGAGAAAGCTCCTAAGTGACCTAGAGAT-GCATTTGTCAACAT 871
Query 180 TTGGGATTGCTGATACCAAAGTTGAAGATGCAGGATTCTCTGAGATCAAGGAGAGATTCA 239
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 872 TTGGGATTGCTGATACCAAAGTTGAAGATGCAGGATTCTCTGAGATCAAGAAGAGATTCA 931
Query 240 AAGAAGCTGTGAAGAAAATCCGCAGTAGGGAGACTAACCAATCGACGAT-TTTGGAAGCT 298
||||||||||||||| |||||||||| ||||||| ||||| |||||||| ||| ||||||
Sbjct 932 AAGAAGCTGTGAAGAGAATCCGCAGTTGGGAGACAAACCAGTCGACGATGTTT-GAAGCT 990
Query 299 GGTCTGTCTGCAGCAAATCAATTCTTTCAAGCCCTGTATGAAGTTCAATCAGTTCTTGTG 358
|||||||||| ||| |||| |||||||||||||||||||| |||||| |||||||||||
Sbjct 991 GGTCTGTCTGAAGCTGATCAGTTCTTTCAAGCCCTGTATGACGTTCAAACAGTTCTTGTG 1050
Query 359 GGTTTCAAAGCTTTACCCATCAAAACTAACCAGAAAGAGAAAGATGTTTACAACCAGGCT 418
|||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| |||
Sbjct 1051 GGTTTCAAAGCTTTGCCCATGAAAACTAACCAGATGGAGAAAGATGTTTACAACCAAGCT 1110
Query 419 ACGGTTGCTCTTGACATCGCGATGCTGAGGCTTGAGAAAGAGCTCCGTGATGTTCTGCAT 478
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1111 ACGGTTGCTCTTGACATCGCGATGTTGAGGCTTGAGAAAGAGCTCTGTGATGTTCTGCAT 1170
Query 479 CAGCACAAACAGCATGTACAGCCTGAATACTTGGCTGTTAGTTCCCATAGAAAGGATATT 538
|||||||||| ||||||||||||||| ||||||||||||||||||| |||||| ||||||
Sbjct 1171 CAGCACAAACGGCATGTACAGCCTGATTACTTGGCTGTTAGTTCCCGTAGAAAAGATATT 1230
Query 539 GTGTACGACGAGTCCTTTGTTTCCTTAGATGATGAAGTTGTTGTTGAAGCCTCTTCACAC 598
|||||||||||||||||||| ||| |||||||||||||| |||| ||||| ||||||||
Sbjct 1231 GTGTACGACGAGTCCTTTGTCTCCCTAGATGATGAAGTTATTGTCGAAGCTTCTTCACAT 1290
Query 599 GAAGATGATGAGCAGATATCAGA-TTTCTATAATTCTGATTTAGTTGATCCCATCGTCCT 657
||||||||||| |||||||| || ||| |||||||||||||| |||||||||||||| ||
Sbjct 1291 GAAGATGATGAACAGATATCGGACTTT-TATAATTCTGATTTGGTTGATCCCATCGTACT 1349
Query 658 TCCTCACATTAAAGCTATTGCAAACACCATGTTTGCTTGCGAGTATGATCAACCATTCTG 717
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1350 TCCTCACATCAAAGCTATTGCAAACGCCATGTTTGCTTGCGAGTATGATCAACCATTCTG 1409
Query 718 TGAAGCTTTCATCATCGTTCAAAGAGAAGCTCTGGATGAGTATATGGTCACTCTTGAAAT 777
||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1410 TGAAGCTTTCATCGGCGTTCAAAGAGAAGCTCTGGAGGAGTATATGGTTACTCTCGAAAT 1469
Query 778 GGAAAGATTCAGCTGCGTTGATGTTCTCAAAATGGACTGGGAGGATTTGAATGGTGCAAT 837
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1470 GGAAAGATTCAGCTGCGTTGATGTTCTCAGAATGGACTGGGAGGATTTGAATGGTGCAAT 1529
Query 838 GAGAAAATGGACAAGGGTTGTTAAGATCATTACTCAGGTCTATCTCCCCAGTGAAAAACA 897
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1530 GAGAAAATGGACAAAGGTTGTTAAGATCATTACTCAGGTCTATCTCGCCAGTGAAAAACA 1589
Query 898 GCTCTGTGAAGAGATCTTGGGAGACTTTGAGTCAATATCTACGGCTTGCTTCATTGAAAT 957
||| ||||| |||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1590 GCTATGTGATCAGATTTTGGGAGACTTTGAGTCAATTTCTACAGCTTGCTTCATTGAAAT 1649
Query 958 CTCAAAAGATACAGTTATATCCCTCCTCAACTTTGGAGAAGCTGTGGCGCTGAGATCTTG 1017
|||||||||| || || |||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1650 CTCAAAAGATGCAATTCTATCACTCCTCAACTTTGGAGAAGCTGTGGTGCTGAGATCTTG 1709
Query 1018 CAAGCCAGAAATGCTTGAGCGCTTCCTTAGTATGTATGAGGTTTCAGCAGAGATTCTCTT 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1710 CAAGCCAGAAATGCTTGAGCGCTTCCTTAGTATGTATGAGGTTTCAGCAGAGATTCTCGT 1769
Query 1078 GGATGTCGATAACCTCTTCCCGGATGAAACAGGCTCGTTTTTAAGAATTGCATTCCACGA 1137
||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| |
Sbjct 1770 GGATGTCGATAACCTCTTCCCCGATGAAACAGGCTCGTCTTTAAGAATTGCATTTCACAA 1829
Query 1138 CCTGTCaaaaaaaCTAGCTGATCATACAACCGCGACCTTCTTAAAGTTCAAAGACGCAAT 1197
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1830 CCTGTCAAAAAAACTAGCTGATCATACAACCACAACCTTCTTAAAGTTCAAAGACGCAAT 1889
Query 1198 AGCCTCAGATGAATCCGCACGCCCCTTTCATGGAGGCGGAATTCATCACCTGACTAGGTA 1257
|||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1890 AGCCTCAGATGAATCCACACGCCCCTTTCATGGAGGCGGGATTCATCACCTGACCAGGTA 1949
Query 1258 TGTAATGAACTACTTGAAGCTTCTCCCGGTGTATACCGACACCCTAAACTCACTTCTTCA 1317
||||||||||||||||||||||||||||| |||||||||| | ||||||||||| |||||
Sbjct 1950 TGTAATGAACTACTTGAAGCTTCTCCCGGAGTATACCGACTCACTAAACTCACTGCTTCA 2009
Query 1318 GAACATACACGTTGACGACTCAATACCCGAGAAAACAGGAGAAGATGTCCTCCCTTCGAC 1377
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2010 GAACATACACGTTGACGACTCCATCCCCGAGAAAACAGGAGAAGATGTCCTCCCTTCGAC 2069
Query 1378 ATTCTCTCCAATGGCTAGACACCTCAGGTCAATCGTCACAACTCTGGAATCCAGCCTTGA 1437
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2070 ATTCTCTCCAATGGCTAGACACCTCAGGTCAATCGTCACAACTCTAGAATCCAGCCTTGA 2129
Query 1438 GCGAAAAGCTCAGCTTTACGCAGACGAAGCACTGAAATCCATTTTCCTGATGAACAACTT 1497
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2130 GCGAAAAGCTCAGCTGTACGCAGACGAAGCACTGAAATCCATTTTCCTGATGAACAACTT 2189
Query 1498 CCGTTACATGGTCCAGAAGGTAAAGGGATCAGAGCTGAGACACTTGTTTGGAGACGAATG 1557
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2190 CCGTTACATGGTCCAGAAGGTAAAGGGATCAGAGCTGAGACGCTTGTTTGGAGACGAATG 2249
Query 1558 GATCAGGAAGCACATTGCAAGCTACCAACGCAATGTCACAAACTACGAGAGATCCTCATG 1617
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct 2250 GATCAGGAAGCACATTGCAAGCTACCAATGCAATGTCACTAACTACGAGAGATCCACATG 2309
Query 1618 GAGCTCTATACTTGCTTTGCTCACAGACAACAACAACTCTGTAAGAACCCTGAGAGAAAG 1677
|||||| ||||| |||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 2310 GAGCTCCATACTCGCTTTGCTCAGAGACAACAACGACTCTGTAAGAACCCTGAGAGAAAG 2369
Query 1678 ATGCAAACTTTTCAGCCTTGCATTTGATGATGTTTACAAGAACCAAACCCATTGGTCAGT 1737
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2370 ATGCAGACTTTTCAGCCTTGCATTTGATGATGTTTACAAGAACCAAACCCGTTGGTCAGT 2429
Query 1738 TCCTGATCCAGAGCTCCGCGATGATCTTCACATCTCAACCTCTGTCAAGGTTGTTCAGTC 1797
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2430 CCCTGATTCAGAGCTCCGCGATGATCTTCACATCTCGACCTCTGTCAAGGTTGTTCAGTC 2489
Query 1798 TTACAGGGGATTTCTTGGAAGAAATGCGGTTCGTATAGGTGAAAAACATATCCGATACAC 1857
|||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||||||
Sbjct 2490 TTACAGAGGATTTCTTGGAAGAAATGCAGTTCGCATAGGCGAAAAACACATCCGATACAC 2549
Query 1858 TTGTGAAGACATTGAGAATATGCTCCTTGATCTCTTTGAATGTTCGCCATCTCCGAGATC 1917
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 2550 TTGTGAAGACATTGAGAATATGCTCCTTGATCTCTTTGAATGTTTGCCATCTCCAAGATC 2609
Query 1918 ATTGCGCAGTTCTCGTA-G-GA-GATGATGATGATGACTCGAGCCTAAT 1963
| ||||||| ||||||| | || |||||||||||||||| |||||||||
Sbjct 2610 ACTGCGCAGCTCTCGTAAGAGATGATGATGATGATGACTTGAGCCTAAT 2658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97238455665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5