BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950858
Length=2023
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 | chr5:245... 3088 0.0
AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of ... 1463 0.0
AT5G61050.1 | Symbols: | histone deacetylase-related / HD-rela... 863 0.0
> AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 | chr5:24566783-24570991
REVERSE LENGTH=2423
Length=2423
Score = 3088 bits (1672), Expect = 0.0
Identities = 1919/2037 (94%), Gaps = 21/2037 (1%)
Strand=Plus/Plus
Query 5 GTCTCATCTCCCGGTTATGGCTATGGCCGGAGAATCTTCCGGC-AAAAAGTGTGGAGACG 63
||| |||||||| |||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct 59 GTCGCATCTCCCAGTTATGGCTATGGCCGGAGAATCTTCCGGCAAAAAAAT-TGGAGACT 117
Query 64 GCGACGGTAGAGTCGCCGGGAAAAGCCAGCGAAAGGTGGGTCTTATTTACGACGAGGCGA 123
| ||||||| |||||| ||||| || |||||||||||||||||||||||||||||| |||
Sbjct 118 GTGACGGTAAAGTCGCGGGGAACAGACAGCGAAAGGTGGGTCTTATTTACGACGAGACGA 177
Query 124 TGTGCAAACACGACACACCTGACGGCGAGGATCACCCTGAGTGTCCCGATCGCATCAGAG 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 178 TGTGCAAACACGACACACCTGACGGCGAGGATCACCCTGAGTGTCCCGACCGCATCAGAG 237
Query 184 TTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAGATGTGTGCTTCTTGGTAGTA 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 TTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAGATGTGTGGTTCTTGGTAGTA 297
Query 244 GCAAAGCGGAAGATAAGCATCTCCAATTGGTTCACACAAAGGACCATGTTAATTTAGTTA 303
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GCAAAGCAGAAGATAAGCATCTCCAATTGGTTCACACAAAGGACCATGTTAATTTAGTTA 357
Query 304 AGAGTATTAGTACAAAACAGAAAGATTATCAGCGAAACAGGATTGCTTCACAGTTGAATT 363
|||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 358 AGAGTATTAGCACAAAACAGAAAGATTATCGGAGAAACAGGATTGCTTCACAGTTGAATT 417
Query 364 CGATTTATCTGAACAGAGGTTCATCTGAAGCAGCATATCTTGCAGCTGGATCTGTTGTAA 423
||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 418 CGATTTATCTGAATGGAGGTTCATCTGAAGCCGCATATCTTGCAGCTGGTTCTGTTGTAA 477
Query 424 AGGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGATTGTGGTTATGCTATTGTCAGGCCCC 483
|| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 478 AGTTGGCAGAAAAAGTTGCAGAAGGAGAGTTAGATTGTGGTTTTGCTATTGTCAGGCCCC 537
Query 484 CAGGGCACCATGCTGAGGCAGATGAAGCAATGGGGTTTTGTTTATTCAACAATATAGCCG 543
|||||||||||||||||||||||||||| ||||| |||||||||||||||||| | ||||
Sbjct 538 CAGGGCACCATGCTGAGGCAGATGAAGCCATGGGTTTTTGTTTATTCAACAATGTTGCCG 597
Query 544 TCGCTTCTAGTTATTTACTTAACGAAAGACCGGATCTAGGGGTCaaaaaaaTTCTGATCG 603
| ||| |||||| |||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 598 TTGCTGCTAGTTTTTTACTAAACGAAAGACCGGATCTAGGGGTCAAGAAAATTCTGATCG 657
Query 604 TTGATTGGGATGTCCATCACGGAAATGGTACACAGAAGATGTTCTGGGAAGATCCTCGTG 663
||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 658 TTGATTGGGATGTCCATCACGGAAATGGTACCCAGAAGATGTTTTGGAAAGATCCTCGTG 717
Query 664 TGCTATTTTTCTCAGTTCATAGGCATGAGTATGGGAGTTTCTATCCAGCGGGTGATGATG 723
| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 718 TACTATTTTTCTCTGTTCATAGGCATGAGTATGGGGGTTTCTATCCAGCGGGTGATGATG 777
Query 724 GAGATTATAACATGGTTGGGGAAGGTCCAGGTGAAGGGTTTAACATAAATGTTCCATGGG 783
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GCGATTATAACATGGTTGGGGAAGGTCCAGGTGAAGGGTTTAACATAAATGTTCCATGGG 837
Query 784 ATCAAGGACGATGCGGAGATGCAGATTATCTTGCTGCATGGGACCATATCTTGATTCCTG 843
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATCAAGGACGATGTGGAGATGCAGATTATCTTGCTGCATGGGACCATATCTTGATTCCTG 897
Query 844 TGGCGAGGGAATTTAACCCGGATATTATTTTGCTTTCAGCTGGATTTGATGCAGCTATTG 903
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 898 TGGCGAGGGAATTTAACCCGGATGTTATTTTTCTTTCAGCTGGATTTGATGCAGCTATTA 957
Query 904 GTGATCCGCTCGGGGGTTGTCGTGTGACCCCATATGGATATTCAGTTATGTTGAAGAA-- 961
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 958 ATGATCCGCTAGGGGGTTGTTGTGTGACCCCATATGGATATTCAGTTATGTTGAAGAAGG 1017
Query 962 --------G--CTGATGGAGTTTGCACATGGAAAGATTGTGATGGTGTTAGAGGGAGGGT 1011
| ||||||||||||||||| |||||||| ||| ||| ||||||||||||||
Sbjct 1018 TTGGTGTTGAACTGATGGAGTTTGCACAAGGAAAGATAGTGCTGGCGTTAGAGGGAGGGT 1077
Query 1012 ACAATCTTGACTCAGTTGCAAAGTCTTCACTTGCATGTGTCCAAGTTTTGCTTGGAGACA 1071
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1078 ACAATCTTGACTCAATTGCAAAGTCTTCACTTGCATGTGTCCAAGTTTTGCTTGAAGACA 1137
Query 1072 AACAAATTCATGGTTCTTCTGAAGCATACCCATTTGAGTCTACATGGCGTGTCATACAAG 1131
|||||||||| || || | |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1138 AACAAATTCAAGGACCTCCGGAAGCATACCCATTCGAGTCGACATGGCGTGTCATACAAG 1197
Query 1132 CGGTACGCAAGAGGCTATGCGCATATTGGCCTTCACTTGCAGATGAATTATCGTGGAATC 1191
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1198 CGGTGCGCAAGAGGCTATGCACATATTGGCCTTCACTTGCAGATGAATTATCGTGGAAGC 1257
Query 1192 TGATTAATCAGAAAACTCCTACTCCAGTTATCCTTATCTCAAGCTCCGACTCTGAAAATG 1251
| |||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 1258 TAATTAATCAGAAAACTCCTACTCCAATCATCCTTATCTCAAGCTCCGACTCTGAAACTG 1317
Query 1252 AAGATGACCCCCATGGACTCCTGGATCAAATGTCGAAACTCAGCATTGAAAACCAC-CAA 1310
|||| || |||| |||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1318 AAGACAACGCCCAAGGACTCCTGGATCAAATGTCGAAACTCAGCATTGAAAACC-CTCAA 1376
Query 1311 GGTACACTACTTGAAAACCACCAAGTAGATA-CTGCATCTACATCTTGGAGAGCTGATCT 1369
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1377 GGTACACTACTTGAAAACCACCAAGTAGA-ACCTGCATCTACATCTTGGAGAGCTGATCT 1435
Query 1370 CGCTAAGGTTGACGTTTGGTATGCCTCTTTTGGATCAAACATGTGGAAACCGAGGTTTCT 1429
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1436 CGCAAAGGTTGACGTTTGGTATGCCTCTTTTGGATCCAACATGTGGAAACCAAGGTTTCT 1495
Query 1430 TTGCTATATTCAAGGGGGACAGGTCGATGGAATGAAAAAGACATGTGTTGGCTCAATGGA 1489
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1496 TTGCTATATTCAAGGGGGACAGGTCGATGGATTGAAAAAGGTATGTGTTGGCTCAATGGA 1555
Query 1490 TAAAAGTCCACCAAAGGAAGTAGTGTGGGAAACATTTCCACATAGATTGTTCTTTGGCCG 1549
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1556 TAAAAGTCCACCAAAGGAAACAGTGTGGGAAACATTTCCACATAGATTGTTCTTTGGCCG 1615
Query 1550 TGAATCTTCAGTTGGTTGGGGTGTAGGAGGAGTTGCTTTCACCAACCCCCTTGCTAATCT 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TGAATCTTCAGTTGGTTGGGGTGTAGGAGGAGTTGCTTTCACCAACCCCCTTGCTAATCT 1675
Query 1610 CATTGATCAAACTCACATGTGTTTGTACCGAATCACGCTTGAGCAGTTCAACGACGTTCT 1669
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1676 CATTGATCAAACTCACATGTGTTTGTACCGTATCACGCTTGAGCAGTTCAATGACGTTCT 1735
Query 1670 GTCTCAAGAAAATGGCTTGAATGTAGATTCAGATTCTCCGGTCTTTGATCTAGCTTCTTT 1729
||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1736 GTCTCAAGAAAATGGTTTGAATGTGGATTCAGATTCTCCGGTCTTTGATCTAGCTGCTTT 1795
Query 1730 GCAGTTAGTAGAGAACAAAGGATCCATTTTAGAAGCTGCTTTGAATAGTTGGTATGGAAA 1789
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1796 GCAGTTAGTAGATAACAAAGGATCCATTTTAGAAGCTCCTTTGAATAGTTGGTATGGAAA 1855
Query 1790 TGTTGTCTGCTTGGGGAAAGAACACGACATTCCTATACTTACAATGACATGCACGCTTTC 1849
||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1856 TGTTGTCTGCTTGGGAAAAGAACGCGACATTCCTATACTTACAATGACTTGCACGCTTTC 1915
Query 1850 TGCTGTTGAGAAGTTCAAATCCGGTGAGGTCCCTCTAAGACCTCCTGCAAAAGCCTATGC 1909
||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||
Sbjct 1916 CGCTGTTGAGAAATTCAAATCCGGTGAGATCCCTATAAGACCTCCTGCAAAAGCTTATGC 1975
Query 1910 CAACACTTTAATAAGAGGACTTGTGGAAGGAGGAAGATTCTCTAAAGAAGAAGCTGAGGC 1969
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1976 CAACACTTTAATAAGGGGACTTGTGGAAGGAGGAAGATTATCTAAAGAAGAAGCTGAGGC 2035
Query 1970 TTACATAGACAATGCTGTGTCTAAGCCTCTCTAGTGTAT--T-ATTTACTCAGAAAC 2023
|||||||||||| ||||||||||| |||||||||||||| | ||||||||||||||
Sbjct 2036 TTACATAGACAAGGCTGTGTCTAAACCTCTCTAGTGTATAATTATTTACTCAGAAAC 2092
> AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of
the RPD3/HDA1 superfamily 18 | chr5:24571171-24574372 REVERSE
LENGTH=2175
Length=2175
Score = 1463 bits (792), Expect = 0.0
Identities = 1048/1173 (89%), Gaps = 12/1173 (1%)
Strand=Plus/Plus
Query 4 TGTCTCATCTCCCGGTTATGGCTATGGCCGGAGAATCTTCCGGCAA-AAAGTGTGGAGAC 62
|||| |||||||||| |||| | ||| || | |||||||||||||| ||| || |||||
Sbjct 83 TGTCACATCTCCCGGATATGACAATGACCAGCGAATCTTCCGGCAAGAAA-TGCGGAGAG 141
Query 63 GGCGACGGTAGAGTCGCCGGGAAAAGCCAGCGAAAGGTGGGTCTTATTTACGACGAGGCG 122
|| ||||| | ||||||||| |||||||||||||||||||||||| |||| |||||| |
Sbjct 142 GGTGACGGCAAAGTCGCCGGTAAAAGCCAGCGAAAGGTGGGTCTTGTTTATGACGAGACC 201
Query 123 ATGTGCAAACACGACACACCTGACGGCGAGGATCACCCT-GAGTGTCCCGATCGCATCAG 181
||||||||||||||||||||| |||| ||| | | | | |||||||||||||| |||||
Sbjct 202 ATGTGCAAACACGACACACCTAACGGTAAGGTTGA-CGTAGAGTGTCCCGATCGTATCAG 260
Query 182 AGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAGATGTGTGCTTCTTGGTAG 241
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 261 AGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTCACTCAAAGATGTGTGGTTCTTGGTGG 320
Query 242 TAGCAAAGCGGAAGATAAGCATCTCCAATTGGTTCACACAAAGGACCATGTTAATTTAGT 301
||| ||||| ||||||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct 321 TAGTAAAGCTGAAGATAAGCATCTCAAATTGGTTCACACAAAGAAACATGTTAATTTAGT 380
Query 302 TAAGAGTATTAGTACAAAACAGAAAGATTATCAGCGAAACAGGATTGCTTCACAGTTGAA 361
||||||||||| |||||| ||||||||| || | |||||| |||||||||||||||| |
Sbjct 381 GAAGAGTATTAGCACAAAAAAGAAAGATTCTCGGAGAAACAAGATTGCTTCACAGTTGGA 440
Query 362 TTCGATTTATCTGAACAGAGGTTCATCTGAAGCAGCATATCTTGCAGCTGGATCTGTTGT 421
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 441 TTCGATTTATCTGAATGGAGGTTCATCTGAAGCTGCATATCTTGCAGCTGGATCTGTTGT 500
Query 422 AAAGGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGATTGTGG-TTATGCTATTGTCAGGC 480
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 501 AAAGGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGATTGTGGCTT-TGCTATTGTCAGGC 559
Query 481 CCCCAGGGCACCATGCTGAGGCAGATGAAGCAATGGGGTTTTGTTTATTCAACAATATAG 540
||||||| |||||||| ||| |||||||||| ||||| |||||||||||||||||| | |
Sbjct 560 CCCCAGGACACCATGCCGAGTCAGATGAAGCCATGGGTTTTTGTTTATTCAACAATGTTG 619
Query 541 CCGTCGCTTCTAGTTATTTACTTAACGAAAGACCGGATCTAGGGGTCaaaaaaaTTCTGA 600
|||| ||| |||||| |||||| ||||||||||| ||||||| ||||| ||||||||||
Sbjct 620 CCGTTGCTGCTAGTTTTTTACTAAACGAAAGACCTGATCTAGATGTCAAGAAAATTCTGA 679
Query 601 TCGTTGATTGGGATGTCCATCACGGAAATGGTACACAGAAGATGTTCTGGGAAGATCCTC 660
| || ||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 680 TTGTCGATTGGGATATCCATCACGGAAATGGTACACAGAAGATGTTCTGGAAAGATTCTC 739
Query 661 GTGTGCTATTTTTCTCAGTTCATAGGCATGAGT-ATGGGAGTTTCTATCCAGCGGGTGAT 719
| || ||| | ||||| |||||||||||||| | | || |||||||||||| || |||
Sbjct 740 GCGTACTAATATTCTCTGTTCATAGGCATGA-TCACGGAAGTTTCTATCCATTTGGCGAT 798
Query 720 GATGGAGA-TTATAACATGGTTGGGGAAGGTCCAGGTGAAGGGTTTAACATAAATGTTCC 778
|||||||| || |||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 799 GATGGAGACTT-TAACATGGTTGGCGAAGGTCCAGGTGAAGGGTTTAACATTAACGTTCC 857
Query 779 ATGGGATCAAGGACGATGCGGAGATGCAGATTATCTTGCTGCATGGGACCATATCTTGAT 838
|||||| |||||| |||| ||||||||||| |||||||| | |||| |||| ||||||||
Sbjct 858 ATGGGAGCAAGGAGGATGTGGAGATGCAGACTATCTTGCCGTATGGAACCACATCTTGAT 917
Query 839 TCCTGTGGCGAGGGAATTTAACCCGGATATTATTTTGCTTTCAGCTGGATTTGATGCAGC 898
|||||| | | |||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 918 CCCTGTGACCAAGGAATTCAAACCAGATATTATTTTGCTTTCAGCTGGATTTGATGCAGC 977
Query 899 TATTGGTGATCCGCTCGGGGGTTGTCGTGTGACCCCATATGGATATTCAGTTATGTTGAA 958
||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 978 TATTGGTGATCCGCTTGGGGGTTGTTGTGTTACCCCATATGGATATTCAGTTATGTTGAA 1037
Query 959 GAAGCTGATGGAGTTTGCACATGGAAAGATTGTGATGGTGTTAGAGGGAGGGTACAATCT 1018
|||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||||||
Sbjct 1038 GAAGCTGATGGAGTTTGCACATGGAAAGATAGTGCTGGCATTAGAGGGAGGATACAATCT 1097
Query 1019 TGACTCAGTTGC-AAAGTCTTCACTTGCATGTGTCCAAGTTTTGCTTGGAGACAAACAAA 1077
||| ||| ||| |||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1098 TGAGTCA-TTGGGAAAGTCTTCACTCGCATGTGTCCAAGTTTTGCTTGAAGACAAACAAA 1156
Query 1078 TTCATGGTTCTTCTGAAGCATACCCATTTGAGTCTACATGGCGTGTCATACAAGCGGTAC 1137
|||||||||| |||||| |||||||||| || |||||| |||||||||||||||||||||
Sbjct 1157 TTCATGGTTCATCTGAAACATACCCATTAGAATCTACACGGCGTGTCATACAAGCGGTAC 1216
Query 1138 GCAAGAGGCTATGCGCATATTGGCCTTCACTTG 1170
|| |||| |||||| ||||||||||||||||||
Sbjct 1217 GCGAGAGACTATGCACATATTGGCCTTCACTTG 1249
> AT5G61050.1 | Symbols: | histone deacetylase-related / HD-related
| chr5:24565482-24566615 REVERSE LENGTH=759
Length=759
Score = 863 bits (467), Expect = 0.0
Identities = 633/713 (89%), Gaps = 12/713 (2%)
Strand=Plus/Plus
Query 1299 GAAAA-CCACCAAGGTACACTACTTGAAAACCACCAAGTAGATACTGCATCTACATCTTG 1357
||||| ||| |||||||||||| ||||||| | ||||||||||| || |||||||| ||
Sbjct 51 GAAAAGCCAGCAAGGTACACTAGTTGAAAAGGAGCAAGTAGATACCGCTTCTACATCCTG 110
Query 1358 GAGAGCTGATCTCGCTAAGGTTGACGTTTGGTATGCCTCTTTTGGATCAAACATGTGGAA 1417
|||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 111 GAGAATTGATCTCGCAAAGGTTGACGTTTGGTATGCCTCTTACGGATCCAACATGTGGAA 170
Query 1418 ACCGAGGTTTCTTTGCTATATTCAAGGGGGACAGGTCGATGGAATGA-AAAAGACATGTG 1476
|||||||||| |||||||||||||||||||||| | ||| ||||||| ||||| ||||||
Sbjct 171 ACCGAGGTTTATTTGCTATATTCAAGGGGGACAAGCCGAGGGAATGATAAAAG-CATGTG 229
Query 1477 TTGGCTCAATGGATAAAAGTCCACCAAAGGAAGTAGTGTGGGAAACATTTCCACATAGAT 1536
| || |||||||| |||||||||||||||||| || ||||| |||||||||||||| |||
Sbjct 230 TCGGTTCAATGGACAAAAGTCCACCAAAGGAAATAATGTGGAAAACATTTCCACATCGAT 289
Query 1537 TGTTCTTTGGCCGTGAATCTTC-A-GTTGGTTGGGGTGTAGGAGGAGTTGCTTTCACCAA 1594
|||| |||||||||||| |||| | ||| ||||||||||||||||||||||| ||||||
Sbjct 290 TGTTATTTGGCCGTGAAACTTCAATGTT--TTGGGGTGTAGGAGGAGTTGCTTACACCAA 347
Query 1595 CCCCCTTGCTAATCTCATTGATCAAACTCACATGTGTTTGTACCGAATCACGCTTGAGCA 1654
|||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 348 TCCCCTTACTAATCTCAATGATCAAACTCACATGTGTTTGTACAGAATCACGCTTGAGCA 407
Query 1655 GTTCAACGACGTTCTGTCTCAAGAAAATG-GCTTGAATGTAGATTCAGATTCTCCGGTCT 1713
||||||||| |||||| ||||||||||| | ||||| |||||||| |||| |||| |||
Sbjct 408 ATTCAACGACCTTCTGTTTCAAGAAAATGAG-TTGAACGTAGATTCTGATTATCCGTTCT 466
Query 1714 TTGATCTAGCTTCTTTGCAGTTAGTAGAGAACAAAGGATCCATTT---TAGAAGCTGCTT 1770
||||||||||| || ||| ||||| |||||| |||||||||||| | || ||||||
Sbjct 467 TTGATCTAGCTGCTCTGCGGTTAGCAGAGAAGGAAGGATCCATTTCACTTCAAACTGCTT 526
Query 1771 TGAATAGTTGGTATGGAAATGTTGTCTGCTTGGGGAAAGAACACGACATTCCTATACTTA 1830
| |||||| |||||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct 527 CGGATAGTTTGTATGGGAATGTTGTCTGCTTGGGGAAAGAAGGCGTCATTCCTATACTTA 586
Query 1831 CAATGACATGCACGCTTTCTGCTGTTGAGAAGTTCAAATCCGGTGAGGTCCCTCTAAGAC 1890
|| |||| ||||||||||||| ||||||||| |||||||| |||||| ||||| ||||||
Sbjct 587 CATTGACTTGCACGCTTTCTGTTGTTGAGAAATTCAAATCGGGTGAGATCCCTATAAGAC 646
Query 1891 CTCCTGCAAAAGCCTATGCCAACACTTTAATAAGAGGACTTGTGGAAGGAGGAAGATTCT 1950
|||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 647 CTCCTGCAAAAGCCTATGCCAACACTTTAATAAGGGGACTTGTGAAAGGGGGAAGATTCT 706
Query 1951 CTAAAGAAGAAGCTGAGGCTTACATAGACAATGCTGTGTCTAAGCCTCTCTAG 2003
||| |||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 707 CTATAGAAGAAGCTGAGGCTTACATAGACAATGCTGCGTCTAAACCTCTCTAG 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100250488365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5