BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950859
Length=2426
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of ... 902 0.0
AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 | chr5:245... 734 0.0
> AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of
the RPD3/HDA1 superfamily 18 | chr5:24571171-24574372 REVERSE
LENGTH=2175
Length=2175
Score = 902 bits (488), Expect = 0.0
Identities = 544/572 (95%), Gaps = 0/572 (0%)
Strand=Plus/Plus
Query 1 GACTGTCACATCTCCCGGAGATGACAATGACCGGCGAATCTTCCGGCAAGAAATGCGGAG 60
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 80 GACTGTCACATCTCCCGGATATGACAATGACCAGCGAATCTTCCGGCAAGAAATGCGGAG 139
Query 61 ACGGTGGCGGTAAATTCGCCGGAAAAAGCCAGCGAAAGGTGGGTCTTGTTTACGACGAGA 120
| |||| ||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 140 AGGGTGACGGCAAAGTCGCCGGTAAAAGCCAGCGAAAGGTGGGTCTTGTTTATGACGAGA 199
Query 121 CGATGTGCAAACACGACACACCTAACGGTGAGGTTGACGTAGAGTGTCCCGATCGCATCA 180
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 200 CCATGTGCAAACACGACACACCTAACGGTAAGGTTGACGTAGAGTGTCCCGATCGTATCA 259
Query 181 GATTTATCTGGGAGAAGCTTCAGCTCGCCGGGGTCACCCAAAGATGTGTGGTTCTTGGTG 240
|| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 260 GAGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTCACTCAAAGATGTGTGGTTCTTGGTG 319
Query 241 GTAGTAAAGCGGAAGATAAGCATCTCAAATTGGTTCACACAAAGAAACATGTTAATTTCG 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 320 GTAGTAAAGCTGAAGATAAGCATCTCAAATTGGTTCACACAAAGAAACATGTTAATTTAG 379
Query 301 TGAAGAGTATTAGCACAAAACAGAAAGATTCTCGGAGAAACAGGATTGCTTCAGTGTTGG 360
|||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 380 TGAAGAGTATTAGCACAAAAAAGAAAGATTCTCGGAGAAACAAGATTGCTTCACAGTTGG 439
Query 361 ATTCGATTTATCTTAATGGAGGTTCATCTGAAGCCGCATATCTTGCAGCTGGATCTGTTG 420
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 440 ATTCGATTTATCTGAATGGAGGTTCATCTGAAGCTGCATATCTTGCAGCTGGATCTGTTG 499
Query 421 TAAATGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGATTGTGGCTTTGCTATAGTGAGGC 480
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 500 TAAAGGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGATTGTGGCTTTGCTATTGTCAGGC 559
Query 481 CCCCAGGACACCATGCCGAGGCAGATGAAGCCATGGGTTTTTGTTTATTCAACAATGTAG 540
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 560 CCCCAGGACACCATGCCGAGTCAGATGAAGCCATGGGTTTTTGTTTATTCAACAATGTTG 619
Query 541 CCGTTGCTGCTAGTTATTTACTAAACGAAAGA 572
||||||||||||||| ||||||||||||||||
Sbjct 620 CCGTTGCTGCTAGTTTTTTACTAAACGAAAGA 651
Score = 669 bits (362), Expect = 0.0
Identities = 450/492 (91%), Gaps = 8/492 (2%)
Strand=Plus/Plus
Query 770 TAGGTATGATCACGGAAGTTTCTATCCA-GCGAGTGATGATGGAGA-TTATAACATGGTT 827
|||| ||||||||||||||||||||||| | | ||||||||||| || ||||||||||
Sbjct 762 TAGGCATGATCACGGAAGTTTCTATCCATTTG-GCGATGATGGAGACTT-TAACATGGTT 819
Query 828 GGGGAAGGTCCAGGTAAAGGGTTTAACATAAACGTTCCATGGGAGCAAGGAGGATGTGGA 887
|| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 820 GGCGAAGGTCCAGGTGAAGGGTTTAACATTAACGTTCCATGGGAGCAAGGAGGATGTGGA 879
Query 888 GATGCAGATTATCTTGCCGCATGGGACCATATCTTGATTCCTGTGACTAAGGAGTTTAAT 947
|||||||| |||||||||| |||| |||| |||||||| |||||||| ||||| || ||
Sbjct 880 GATGCAGACTATCTTGCCGTATGGAACCACATCTTGATCCCTGTGACCAAGGAATTCAAA 939
Query 948 CCCGATATTATTTTGCTTTCAGCTGGATTTGATGCAGCTATCGGTGATCCGCTTGGGGGT 1007
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 940 CCAGATATTATTTTGCTTTCAGCTGGATTTGATGCAGCTATTGGTGATCCGCTTGGGGGT 999
Query 1008 TGTTGTATTACACCAGATGGATATTCAGTTATGTTGAAGAAGCTAATGGAGTTTGCACAA 1067
|||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1000 TGTTGTGTTACCCCATATGGATATTCAGTTATGTTGAAGAAGCTGATGGAGTTTGCACAT 1059
Query 1068 GGAAAGATAGTGCTGGCGTTAGAGGGAGGGTACAATCTTGAGTCATTGGCAAAGTCTTCA 1127
||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1060 GGAAAGATAGTGCTGGCATTAGAGGGAGGATACAATCTTGAGTCATTGGGAAAGTCTTCA 1119
Query 1128 CTCGCATGTGTCCAAGTTCTGCTTGAAGAAAAAGGAATTCAATG-TTCTTCTGGAGCATA 1186
|||||||||||||||||| |||||||||| ||| |||||| || ||| |||| | ||||
Sbjct 1120 CTCGCATGTGTCCAAGTTTTGCTTGAAGACAAACAAATTCA-TGGTTCATCTGAAACATA 1178
Query 1187 CCCATTAGAATCTACACGGCGTGTCATA-AGAGCGGTACGCGAAAGACTATGCACATATT 1245
|||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||
Sbjct 1179 CCCATTAGAATCTACACGGCGTGTCATACA-AGCGGTACGCGAGAGACTATGCACATATT 1237
Query 1246 GGCCTTCACTTG 1257
||||||||||||
Sbjct 1238 GGCCTTCACTTG 1249
Score = 270 bits (146), Expect = 4e-71
Identities = 274/330 (83%), Gaps = 31/330 (9%)
Strand=Plus/Plus
Query 1677 ATGACGTCTAATGAGAATTTAAAGAACCTAAGTGCGGACAA-AAAC-CCTGCTGACGCTA 1734
||| |||||||||||||||||||||||| |||||| || || |||| || ||||||||
Sbjct 1258 ATGGCGTCTAATGAGAATTTAAAGAACCCAAGTGCAGA-AAGAAACTCC-GCTGACGCCC 1315
Query 1735 TCCTTCATGAAGTGGAAGAGTTAAAGTCTCT-ATGGGCTGCACGAGATGGAGAATTGGAG 1793
|||||| |||||||||||||||||||||||| || |||||| |||||||||||| |||||
Sbjct 1316 TCCTTCGTGAAGTGGAAGAGTTAAAGTCTCTAAT-GGCTGCCCGAGATGGAGAACTGGAG 1374
Query 1794 GCAAGGAGAAAAGAGTTAAAGGCCAAAAAGATGGAGCTAGAA---A-CG---------T- 1839
||||||||||||||||||||||||||||| | |||||||||| | || |
Sbjct 1375 GCAAGGAGAAAAGAGTTAAAGGCCAAAAATAAGGAGCTAGAAGCGAACGAGAAGGAGCTA 1434
Query 1840 G--GC-----TAATGTTGGTTGGCGCTCGAGAAGATG-AGTTTCGTGGTCTTCGTGCCAA 1891
| || |||||||| || ||||||| || |||| | | | ||||||||| ||| ||
Sbjct 1435 GAAGCGGGACTAATGTTGATTCGCGCTCGGGAGGATGTAATCT-GTGGTCTTCATGCAAA 1493
Query 1892 AGTAGAGAGTTTG-ATGCGGGAGCGAGATGAGGCGGTAGCGAAAGCTGAGCGCCTAGATA 1950
| ||||||||||| | || |||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1494 AATAGAGAGTTTGCA-GCAGGAGCGAGATGAGGCGGTAGCGAAAGCTGAACGCATAGATA 1552
Query 1951 AGGAACTCCAAGAAGAAAGGCCAAGAAGCC 1980
||||||||||||| || ||| |||||||||
Sbjct 1553 AGGAACTCCAAGAGGATAGGGCAAGAAGCC 1582
Score = 178 bits (96), Expect = 2e-43
Identities = 106/111 (95%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 630 GATCTAGGTGTCAAGAAAATTCTGATTGTTGATTGGGATATCCATCATGGAAATGGTACA 689
||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 655 GATCTAGATGTCAAGAAAATTCTGATTGTCGATTGGGATATCCATCACGGAAATGGTACA 714
Query 690 CAGAAGATGTTCTGGAAAGATCCTCGCGTACTGATATTCTCTGTTCATAGG 740
||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 715 CAGAAGATGTTCTGGAAAGATTCTCGCGTACTAATATTCTCTGTTCATAGG 765
> AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 | chr5:24566783-24570991
REVERSE LENGTH=2423
Length=2423
Score = 734 bits (397), Expect = 0.0
Identities = 514/571 (90%), Gaps = 6/571 (1%)
Strand=Plus/Plus
Query 5 GTCACATCTCCCGGAGATGACAATGACCGGCGAATCTTCCGGC-AAGAAATGCGGAGACG 63
||| |||||||| | ||| | ||| |||| |||||||||||| || |||| ||||||
Sbjct 59 GTCGCATCTCCCAGTTATGGCTATGGCCGGAGAATCTTCCGGCAAAAAAAT-TGGAGACT 117
Query 64 GTGGCGGTAAATTCGCCGGAAAAAGCCAGCGAAAGGTGGGTCTTGTTTACGACGAGACGA 123
||| ||||||| |||| || || || |||||||||||||||||| |||||||||||||||
Sbjct 118 GTGACGGTAAAGTCGCGGGGAACAGACAGCGAAAGGTGGGTCTTATTTACGACGAGACGA 177
Query 124 TGTGCAAACACGACACACCTAACGGTGAGGTTGA-CGTAGAGTGTCCCGATCGCATCAGA 182
|||||||||||||||||||| |||| |||| | | | | ||||||||||| |||||||||
Sbjct 178 TGTGCAAACACGACACACCTGACGGCGAGGATCACCCT-GAGTGTCCCGACCGCATCAGA 236
Query 183 TTTATCTGGGAGAAGCTTCAGCTCGCCGGGGTCACCCAAAGATGTGTGGTTCTTGGTGGT 242
|||||||||||||||||||||||||||| || | ||||||||||||||||||||| ||
Sbjct 237 GTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAGATGTGTGGTTCTTGGTAGT 296
Query 243 AGTAAAGCGGAAGATAAGCATCTCAAATTGGTTCACACAAAGAAACATGTTAATTTCGTG 302
|| ||||| ||||||||||||||| ||||||||||||||||| | ||||||||||| ||
Sbjct 297 AGCAAAGCAGAAGATAAGCATCTCCAATTGGTTCACACAAAGGACCATGTTAATTTAGTT 356
Query 303 AAGAGTATTAGCACAAAACAGAAAGATTCTCGGAGAAACAGGATTGCTTCAGTGTTGGAT 362
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||
Sbjct 357 AAGAGTATTAGCACAAAACAGAAAGATTATCGGAGAAACAGGATTGCTTCACAGTTGAAT 416
Query 363 TCGATTTATCTTAATGGAGGTTCATCTGAAGCCGCATATCTTGCAGCTGGATCTGTTGTA 422
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 417 TCGATTTATCTGAATGGAGGTTCATCTGAAGCCGCATATCTTGCAGCTGGTTCTGTTGTA 476
Query 423 AATG-TGGCAGAGAAAGTTGCAGAAGGAGAGTTAGATTGTGGCTTTGCTATAGTGAGGCC 481
|| | ||||||| ||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 477 AA-GTTGGCAGAAAAAGTTGCAGAAGGAGAGTTAGATTGTGGTTTTGCTATTGTCAGGCC 535
Query 482 CCCAGGACACCATGCCGAGGCAGATGAAGCCATGGGTTTTTGTTTATTCAACAATGTAGC 541
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 536 CCCAGGGCACCATGCTGAGGCAGATGAAGCCATGGGTTTTTGTTTATTCAACAATGTTGC 595
Query 542 CGTTGCTGCTAGTTATTTACTAAACGAAAGA 572
|||||||||||||| ||||||||||||||||
Sbjct 596 CGTTGCTGCTAGTTTTTTACTAAACGAAAGA 626
Score = 597 bits (323), Expect = 2e-169
Identities = 468/535 (87%), Gaps = 22/535 (4%)
Strand=Plus/Plus
Query 787 GTTTCTATCCAGCGAGTGATGATGGAGATTATAACATGGTTGGGGAAGGTCCAGGTAAAG 846
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 754 GTTTCTATCCAGCGGGTGATGATGGCGATTATAACATGGTTGGGGAAGGTCCAGGTGAAG 813
Query 847 GGTTTAACATAAACGTTCCATGGGAGCAAGGAGGATGTGGAGATGCAGATTATCTTGCCG 906
||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |
Sbjct 814 GGTTTAACATAAATGTTCCATGGGATCAAGGACGATGTGGAGATGCAGATTATCTTGCTG 873
Query 907 CATGGGACCATATCTTGATTCCTGTGACTAAGGAGTTTAATCCCG-ATATTATTTTGCTT 965
|||||||||||||||||||||||||| | | ||| ||||| |||| || ||||||| |||
Sbjct 874 CATGGGACCATATCTTGATTCCTGTGGCGAGGGAATTTAA-CCCGGATGTTATTTTTCTT 932
Query 966 TCAGCTGGATTTGATGCAGCTATCGGTGATCCGCTTGGGGGTTGTTGTATTACACCAGAT 1025
||||||||||||||||||||||| ||||||||| |||||||||||| | || ||| ||
Sbjct 933 TCAGCTGGATTTGATGCAGCTATTAATGATCCGCTAGGGGGTTGTTGTGTGACCCCATAT 992
Query 1026 GGATATTCAGTTATGTTGAAGAAGCT--------AA-TG--G-AGTTTGCACAAGGAAAG 1073
|||||||||||||||||||||||| | || || | |||||||||||||||||
Sbjct 993 GGATATTCAGTTATGTTGAAGAAGGTTGGTGTTGAACTGATGGAGTTTGCACAAGGAAAG 1052
Query 1074 ATAGTGCTGGCGTTAGAGGGAGGGTACAATCTTGAGTCA-TTGGCAAAGTCTTCACTCGC 1132
||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| ||
Sbjct 1053 ATAGTGCTGGCGTTAGAGGGAGGGTACAATCTTGACTCAATTG-CAAAGTCTTCACTTGC 1111
Query 1133 ATGTGTCCAAGTTCTGCTTGAAGAAAAAGGAATTCAATGTTCTTCTGGA-GCATACCCAT 1191
||||||||||||| |||||||||| ||| ||||||| | || | ||| ||||||||||
Sbjct 1112 ATGTGTCCAAGTTTTGCTTGAAGACAAACAAATTCAAGGACCTCC-GGAAGCATACCCAT 1170
Query 1192 TAGAATCTACACGGCGTGTCATA-AGAGCGGTACGCGAA-AGACTATGCACATATTGGCC 1249
| || || ||| ||||||||||| | |||||| ||| || || |||||||||||||||||
Sbjct 1171 TCGAGTCGACATGGCGTGTCATACA-AGCGGTGCGC-AAGAGGCTATGCACATATTGGCC 1228
Query 1250 TTCACTTGCAGATGAGCTATCATGTAAGCTGATTGATCAGAAAACTCTTACTCCA 1304
||||||||||||||| |||| || ||||| ||| |||||||||||| |||||||
Sbjct 1229 TTCACTTGCAGATGAATTATCGTGGAAGCTAATTAATCAGAAAACTCCTACTCCA 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120481308000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5