BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950866
Length=646
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61130.1 | Symbols: PDCB1 | plasmodesmata callose-binding pr... 1042 0.0
> AT5G61130.1 | Symbols: PDCB1 | plasmodesmata callose-binding
protein 1 | chr5:24587213-24589580 REVERSE LENGTH=1042
Length=1042
Score = 1042 bits (564), Expect = 0.0
Identities = 621/648 (96%), Gaps = 5/648 (1%)
Strand=Plus/Plus
Query 1 ATTTTGTCTGAACGGCATCTATGGCTGCTCTGGTGCTTTCACTTCTCCTTCTAGCCATGG 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 193 ATTTTGTCTGAAC-GCATCTATGGCTGCTCTGGTGCTTTCACTTCTCCTTCTATCCTTGG 251
Query 61 CTGGACATTCTAGTGCGTCATGGTGTGTGTGTAAAACAGGACTGAGTGATACAGTTCTTC 120
|||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| || |
Sbjct 252 CTGGACATTCTAGTGCCTCATGGTGTGTGTGTAAGACAGGGCTGAGTGATACAGTGCTAC 311
Query 121 AGGGAACCCTAGACTATGCGTGTGGAAATGGAGCAGATTGTAATCCTACTAAACCAAAAC 180
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 312 AGGCAACCCTAGACTATGCTTGTGGAAATGGAGCAGATTGTAATCCTACTAAACCAAAAC 371
Query 181 AATCTTGCTTCAACCCTGACAATGTTAGGTCTCATTGCAACTATGCAGTCAATAGCTACT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 372 AATCTTGCTTCAACCCTGACAATGTTAGGTCTCATTGCAACTATGCAGTCAATAGCTTCT 431
Query 241 TCCAAAAGAAGGGTCAATCTCCTGGCTCTTGTAATTTCGATGGCACTGCCACTCCCACTA 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 432 TCCAAAAGAAGGGTCAATCTCCTGGCTCTTGTAATTTCGATGGAACTGCCACTCCCACTA 491
Query 301 ACTCCGATCCCAGTTATACAGGGTGTACCTTTCCTACTAGTGCCAGTGGCTCTAGCGGCA 360
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 492 ACTCCGATCCCAGTTATACAGGTTGTGCCTTTCCTACTAGTGCCAGTGGCTCTAGCGGCA 551
Query 361 GCACGACTGTGACACCTGGCACAACCAATCCAAAAGGCAGCTCAA-GCACCACCACACTT 419
|||| |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 552 GCACAACTGTGACACCTGGCACAACCAATCCAAAAGGCAGCCCAACG-ACCACCACACTT 610
Query 420 CCTGGTAGTGGTACCAACAGTCCTTATTCAGGGAACCCAACCAATGGAGTTTTTGGGGGC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 CCTGGTAGTGGTACCAACAGTCCTTATTCAGGGAACCCAACCAATGGAGTTTTTGGGGGA 670
Query 480 AATAGCACAGGAGGCACCACTGGGACAGGGATTAATCCGGATTACACAACAGAAAGCAGC 539
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 671 AATAGCACAGGAGGCACCACTGGGACAGGGATTAACCCGGATTACACGACAGACAGCAGC 730
Query 540 GCGTTTGCTCTCAAGAACTCAAGCAAATTGTTCGTCTGCCTTCTCTTTG-TCGCTTCGAG 598
||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||
Sbjct 731 GCGTTTGCTCTCAAGAACTCAAGCAAATTGTTCATCTGCCTTCTCTT-GATCGCTTCGAG 789
Query 599 TGGATTCTGTTCTTTCTTGATGCTCTAAGGATGTTAATGGTCTCTGGT 646
||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 790 TGGATTCTGCTCTTTCCTGATGCTCTAAGGATGTTAATGGTCTCTGGT 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31195405287
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5