BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950876
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61210.1 | Symbols: SNAP33, ATSNAP33, SNP33, ATSNAP33B | sol... 1485 0.0
> AT5G61210.1 | Symbols: SNAP33, ATSNAP33, SNP33, ATSNAP33B | soluble
N-ethylmaleimide-sensitive factor adaptor protein 33
| chr5:24623299-24625631 FORWARD LENGTH=1472
Length=1472
Score = 1485 bits (804), Expect = 0.0
Identities = 900/947 (95%), Gaps = 3/947 (0%)
Strand=Plus/Plus
Query 1 TGATATTTTTCTGAGAGAAAATGTTTGGTTTGAGGAAATCACCGGCTAATCTTCCCAAGC 60
||||||| | |||||||| |||||||||||| |||||||||||||| |||||||||||||
Sbjct 285 TGATATTATCCTGAGAGACAATGTTTGGTTTAAGGAAATCACCGGCAAATCTTCCCAAGC 344
Query 61 ATAACTCTGTCGATCTCAAGTCTTCCAAGCCAAATCCTTTCGATTCAGATGATGAAT-TG 119
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 345 ATAACTCAGTCGACCTCAAGTCTTCCAAGCCAAATCCTTTCGATTCAGATGATGAATCT- 403
Query 120 GACAACAAACATACCCTTAACCCCTCTAAGAGGACTACCTCTGAACCATCTTTGGCTGAT 179
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 404 GACAACAAACATACCCTTAACCCTTCTAAGAGGACTACCTCTGAACCCTCTTTGGCTGAT 463
Query 180 ATGACAAACCCTTTTGATGGTGAGAGAGTTGAGAAAGGATATAGTAGTTCATCGAAACAG 239
|||||||||||||||| ||||||||||||| |||||||| ||||||||||||| ||||||
Sbjct 464 ATGACAAACCCTTTTGGTGGTGAGAGAGTTCAGAAAGGAGATAGTAGTTCATCCAAACAG 523
Query 240 TCATTGATTTCGAACTCGAAATACCAGTACAAGAACAATTTCCGTGATTCCGGAGGTATC 299
|||||| |||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 524 TCATTGTTTTCGAACTCCAAATACCAGTACAAGAACAATTTCCGTGATTCTGGTGGTATT 583
Query 300 GAAAACCAGTCCGTTCAGGAGCTTGAAGGTTATGCTGTCTACAAGGCTGAAGAGACGACG 359
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 584 GAAAACCAGTCGGTTCAGGAGCTTGAAGGTTATGCTGTGTACAAGGCTGAAGAGACTACG 643
Query 360 AAATCTGTACACGGTTGTTTGAAGGTAGCAGAAGATATTAGGTCAGATGCTACCAGAACT 419
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 644 AAATCTGTACAAGGTTGTTTGAAGGTAGCAGAAGATATAAGGTCTGATGCTACCAGAACT 703
Query 420 TTGGTCATGTTACACGAGCAGGGCGAGCAAATCACAAGGACGCACCATAAAGCTGTTGAA 479
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 704 TTGGTCATGTTACACGATCAGGGCGAGCAAATCACTAGGACGCACCATAAAGCCGTTGAA 763
Query 480 ATCGATCAGGATCTCAGTCGAGGTGAGAAGCTTCTTGGAAGCCTTGGAGGCATGTTTTCA 539
||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 764 ATCGACCATGATCTCAGTCGTGGTGAGAAACTTCTTGGAAGCCTTGGAGGCATGTTTTCA 823
Query 540 AAGACTTGGAAACCAAAGAAGACTCGTCCTATAAATGGTCCTGTCATAACCAGAGATCAC 599
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 824 AAGACTTGGAAACCAAAGAAGACTCGTCCTATAAATGGTCCCGTCGTAACCAGAGATGAC 883
Query 600 TCACCAACGAGAAGAGTTAACCACTTAGAGAAAAGGGAAAAACTGGGACTGAACTCAGCA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TCACCAACGAGAAGAGTTAACCACTTAGAGAAAAGGGAAAAACTGGGACTGAACTCAGCA 943
Query 660 CCCAAAGGACAATCAAGAACCCGAGAACCGCTCCCCGAATCAGCTGATGCCTATCAGAGA 719
|||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 944 CCCAGAGGACAATCAAGAACCCGAGAACCACTCCCCGAATCAGCTGATGCTTATCAGAGA 1003
Query 720 GTGGAGATGGAAAAGGCTAAGCAAGACGACGGGCTTTCAGACTTGAGTGATATACTGGGG 779
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1004 GTGGAGATGGAAAAAGCTAAGCAAGACGATGGGCTTTCAGACTTGAGTGATATACTCGGC 1063
Query 780 GAGCTAAAGAACATGGCTGTTGACATGGGAAGCGAAATCGAGAAGCAGAATAAAGGACTT 839
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1064 GAGCTAAAGAACATGGCTGTTGACATGGGAAGCGAAATCGAGAAGCAGAACAAAGGACTT 1123
Query 840 GACCATCTTCATGATGATGTTGACGAACTCAACTTCAGAGTGCAACAATCAAACCAACGT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 GACCATCTTCATGATGATGTTGACGAACTCAACTTCAGAGTGCAACAATCAAACCAACGT 1183
Query 900 GGACGCCGTTTGCTTGGAAAGTAGATGAACAGAGAGTT-ATATGTTC 945
|| ||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1184 GGTCGCCGTTTGCTTGGAAAGTAGATGAACAGAGGGTTTATATGTTC 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46215415240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5