BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950890
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61340.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1600 0.0
> AT5G61340.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G26650.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:24662004-24663117 REVERSE LENGTH=1114
Length=1114
Score = 1600 bits (866), Expect = 0.0
Identities = 973/1025 (95%), Gaps = 6/1025 (1%)
Strand=Plus/Plus
Query 1 AAG-AAATAGCAAAAACTAGAATGAAGAAGACAATGGAGGATCCAAGCAAGATCATGAGA 59
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 AAGAAAATAGCAAAAACTAGAATGAAGAAGACAATGGAGGATCCAAGCAAGATCATGAGA 112
Query 60 AGGTCAATTCACACTTTCCTCCAAAACTACCACCGTGTCACCACCGCAGCCGCCGTGGCc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 AGGTCAATTCACACTTTCCTCCAAAACTACCACCGTGTCACCACCGCAGCCGCCGTGGCC 172
Query 120 ctccctttctccgccggtctcctcctctctcagcctttcttctcttcttcctcttctatc 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 173 CTCCCTTTCTCCGCCGGTCTCCTCCTCTCTCAGCCTTTCTTCTCTTCTTCCTCTTCCACC 232
Query 180 cttcACATGAGGCTTAACATGCTCTTTCGCGGAGCGGGTTTCTCTTCTTCTCACAATTTC 239
|||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||
Sbjct 233 CTTCACATGAGGCTTAACATGCTCTTCCGCGGAGCGGGTTTCTCTTCTTCTCATGACTTC 292
Query 240 TTCAATATCTTAAGCCTTAAACTCTCACAAACCCTATCTTCCTCTTTATTCACTCTTCCT 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TTCAACATCTTAAGCCTTAAACTCTCACAAACCCTATCTTCCTCTTTATTCACTCTTCCT 352
Query 300 TTCTCCCTCACTTTCCTCCTTTTATCCAAAGCTTACGTCATCAAACTTCTATCAAACAAT 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TTCTCCCTCACATTCCTCCTTTTATCCAAAGCTTACGTCATCAAACTTCTATCAAACAAT 412
Query 360 CACTCTGCAGATTCATC-TGT-TTTT-TACCTCCGGCTTCTCAAAACTTACGTTTGTAAC 416
|||||||||||||| || | | |||| ||||||||||||||||||||||||||||| |||
Sbjct 413 CACTCTGCAGATTCCTCCTCTGTTTTCTACCTCCGGCTTCTCAAAACTTACGTTTGCAAC 472
Query 417 TTCTTCTTCCTTCTCTCTGCAAACGCCTCTGCTTTTGCTCTGTTTTTCGTAGCATACAAT 476
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 473 TTCTTCTTCCTTCTCTCTGCAAACGCCTCTGCTTTTGCTCTGTTTTTCTTAGCATACAAT 532
Query 477 ACCCTTGAAGCTTTTGGATTCTCTTCAAGAAACTTCTACACTTTCCTCTCCGTATGCTCA 536
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 533 ACCCTTGAAGCCTTTGGATTCTCTTCAAGAAACTTCTACACTTTCCTCTCCCTATCCTCA 592
Query 537 CCGATTATCTACTCGATTATCATCGCAAACGCCTTTGTCATCTCCAATCTAGCCTTGGTT 596
| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 593 GCAATCATCTACTCAATTATCATCGCAAACGCCTTTGTCATCTCTAATCTAGCCTTGGTT 652
Query 597 TCATCACCTTCTTCTTCCTCAGGAGGATACACCAACATTCTCAAGGCGTGTCTTCTTATT 656
|||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||
Sbjct 653 TCATCACCTTCTTCTTCCTCGGGAGGATACACAAACATCCTCAAGGCGTGTCTTCTGATT 712
Query 657 CACGGAAGAAGTTCAACAGCATTGGCTATTGCTCTTCCTACCAATCTTGGCTTAGCAGGA 716
| |||||||| |||||||||| ||||| ||||||| ||||||||||| ||||||||||||
Sbjct 713 CGCGGAAGAAATTCAACAGCAATGGCTCTTGCTCTGCCTACCAATCTCGGCTTAGCAGGA 772
Query 717 GTCGAAGCCTTGTTTCAGTACAGGGTCTTGAGATCTTATTACAAAGGAGACAGAGATATC 776
||||||||||||||||||||| | ||| |||||||||||||||| |||||||||||||||
Sbjct 773 GTCGAAGCCTTGTTTCAGTACCGAGTCATGAGATCTTATTACAATGGAGACAGAGATATC 832
Query 777 ACATCCATAGCTCTCGAAGGAACCTTCATAGCTTACTTATACGCTCTCTTCTTGGTTCTT 836
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 ATATCCATAGCTCTTGAAGGAACCTTCATAGCTTACTTATACGCTCTCTTCTTGGTTCTT 892
Query 837 GACACGATAGTCAACTTCCTTTTTTACCAGAGCTGCATCAAGAACGAGGAAGATCAAAAG 896
||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 893 GACACCATAGTCAACTTCCTCTTTTACCAGAGCTGCATCAAAAACGAGGAAGATCAAAAT 952
Query 897 ATCGGTAGAGAAGACGAGTATTCGATCAAGATCCAAATCAGCGAAACAGAGAACACAAAG 956
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 953 ATCGGTAGAGAAGACGAGTATTCAATCAAGATCCAAATCAGCGAAACAGAGAACACAAAG 1012
Query 957 ATACACATCAATGGATCAAAGAATTTACAAGAAATATTGTGACTTTCTTGAT-TTGGTTG 1015
||||||||||| ||||||||||| || |||||||| |||||||| ||||| | |||||||
Sbjct 1013 ATACACATCAAAGGATCAAAGAACTTGCAAGAAATCTTGTGACTCTCTTG-TGTTGGTTG 1071
Query 1016 ATGTA 1020
|||||
Sbjct 1072 ATGTA 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5