BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950896
Length=2241
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61400.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2704 0.0
AT5G61410.1 | Symbols: RPE, EMB2728 | D-ribulose-5-phosphate-3-... 211 2e-53
> AT5G61400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:24681550-24683514 FORWARD LENGTH=1965
Length=1965
Score = 2704 bits (1464), Expect = 0.0
Identities = 1827/1994 (92%), Gaps = 58/1994 (3%)
Strand=Plus/Plus
Query 100 ATGTTGAAGCATCTGTTTCTCCAACATAGAAGAACTTCTTCAGCTTACTTCTACAAGTTT 159
|||||||||| |||| ||| ||||||| |||| | |||| |||||| | |||||||
Sbjct 1 ATGTTGAAGCTTCTGCTTCCCCAACAT---AGAA---CATCAGTTTACTTGTTCAAGTTT 54
Query 160 CAATTTTTCACCTTTAGATTGTTCTCTCAGTCACCTTATCTGCCAAATTCAGCATCTTCG 219
|||||||||| ||||||||| || ||||| || |||| |||| ||||||| |||
Sbjct 55 CAATTTTTCAACTTTAGATTCTTATCTCAATCTCCTTCTCTGTCAAATTCGGCA------ 108
Query 220 TTGCTCTCTTTGTCGTCGTCTTCTTCTTCGAGTCTGGCTGAAGCAATACTGAAATGCAGA 279
| || || | | || |||||||||||||||||||||||||||||||||||||||
Sbjct 109 -T-CT-TC----T--T--TC-TCTTCTTCGAGTCTGGCTGAAGCAATACTGAAATGCAGA 156
Query 280 TCAGCGGAAGAAGCGTTCAAGCTGTTCGAAACGTCTTCGATTTCTCG-GCTCTCGAAGAC 338
|||||||||||||||||||||||||||||||||||||||| ||||| | |||| ||| |
Sbjct 157 TCAGCGGAAGAAGCGTTCAAGCTGTTCGAAACGTCTTCGAGATCTCGAG-TCTCCAAGTC 215
Query 339 AA-CGGATCTCCAATCTTTTTCAGCTGTAATTCATGTTTTAACCGGAGCTCACAAGTATA 397
|| || |||| ||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 216 AAACG-ATCTTCAATCTTTTTCGGCAGTGATTCATGTTTTAACCGGAGCTCACAAGTATA 274
Query 398 CGCTCGCCAGGTGTTTGATAAAAAGCCTCATAGAGCGTCTCAGGCGCTACAGTGAGCCGA 457
|||||||||| ||||||||||||||||||||||| ||||| | ||| ||||||||||||
Sbjct 275 CGCTCGCCAGATGTTTGATAAAAAGCCTCATAGAACGTCTGAAACGCCACAGTGAGCCGA 334
Query 458 CTAACATTTCTCATAGACTTTTCAATGCTCTTGAAGATATTCAGAGTCCAAAATTCAGTA 517
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 335 GTAACATGTCTCATAGACTTTTCAATGCTCTGGAAGATATTCAGAGTCCAAAATTCAGTA 394
Query 518 TCGGAGTGTTTAGTCTATTGATCATGGAGTTTTTGGAGATGGGTTTGTTTGAAGATGCTC 577
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||
Sbjct 395 TCGGAGTGTTTAGTCTATTGATTATGGAGTTTCTGGAGATGGGTTTGTTTGAAGAAGCTC 454
Query 578 TTTGGGTGAGTCGAGAGATGAGATGTTCACCGGATTCGAAAGCTTGTCTTGCCATTTTGA 637
||||||||||||||||||||| ||||||||||||||| |||||||||||| | |||||||
Sbjct 455 TTTGGGTGAGTCGAGAGATGAAATGTTCACCGGATTCAAAAGCTTGTCTTTCGATTTTGA 514
Query 638 ATGGATTGGTTAGAAGGAGAAGGTTTGATTCTGTCTGGGTTGATTACCAACTTATGATCT 697
|||| ||||||||||||||| |||||||||| || |||||||||||||||||||||||||
Sbjct 515 ATGGCTTGGTTAGAAGGAGACGGTTTGATTCAGTTTGGGTTGATTACCAACTTATGATCT 574
Query 698 CTCGTGGGTTGGTCCCTGATGTCCACATTTACTCAGTTTTGTTTCAATGCTGTTTCAAGC 757
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 575 CTCGTGGGTTGGTCCCTGATGTCCACATTTACTTTGTTTTGTTTCAATGCTGTTTCAAGC 634
Query 758 AAGGT-TTTCCCTCCAAGAAAGAGAAACTTCTTGATGAAATGACGTCGTTAGGGGTCAAG 816
||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 635 AAGGTCTTTAC-TCCAAGAAAGAGAAACTTCTTGATGAAATGACGTCGTTAGGGATCAAG 693
Query 817 CCAAATGTTTATATCTATACCATATATATCCGTGATCTGTGTAGGGAAAATAAGATGGAA 876
|| |||||||||||||||||||||||||||| |||||| |||||||| |||||||||||
Sbjct 694 CCGAATGTTTATATCTATACCATATATATCCTTGATCTCTGTAGGGATAATAAGATGGAG 753
Query 877 GAAGCGGAGAAAATGTTCGAGTTGATGAAGAAACATGGTGTTGTTCCAAACTTGTATACT 936
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 754 GAAGCGGAGAAAATGTTCGAGTTGATGAAGAAACATGGTGTTCTTCCAAACTTGTATACT 813
Query 937 TACAGTGCAATGATTGATGGTTATTGTAAGACCGGTAACCTGAGACAAGCTTACGGCTTG 996
||||||||||||||||||||||| || |||||||||||| |||||||||||||||| |||
Sbjct 814 TACAGTGCAATGATTGATGGTTACTGCAAGACCGGTAACGTGAGACAAGCTTACGGATTG 873
Query 997 TATAAGGAGATTCTTGTTGCTGAATTGCTGCCAAATGTTGTTGTTTTCGGCACATTGGTC 1056
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 874 TATAAGGAGATTCTTGTTGCTGAATTGCTGCCAAATGTTGTTGTTTTCGGTACATTGGTC 933
Query 1057 GATGGTTTTTGCAAAGCTCGCGAATTGGTAGCTGCAAGAAGCCTTTTCGTGCATATGGTG 1116
||||| |||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 934 GATGGATTTTGCAAAGCTCGCGAATTGGTAACTGCGAGGAGCCTTTTCGTGCATATGGTG 993
Query 1117 AAGTTTGGGGTTGATCCTAATTTATATGTTTATAACTGTTTAATTCATGGACAGTGCAAA 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 994 AAGTTTGGGGTTGATCCTAATTTATATGTTTATAACTGTTTAATTCATGGACATTGCAAA 1053
Query 1177 TCAGGGAACATGTTGGAAGCAATGGGATTACTTTCTGAGATGGAAAGTTTGAATCTTTCG 1236
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1054 TCAGGGAACATGTTGGAAGCAGTGGGATTACTTTCTGAGATGGAAAGTTTGAATCTTTCG 1113
Query 1237 CCTGATGTATTCACTTATACTATACTTATCAACGGGCTATGTACTGAAGAGC-GGCTAGC 1295
||||||||||||||||| ||||||||||||||||||||||||| |||||| | || ||||
Sbjct 1114 CCTGATGTATTCACTTACACTATACTTATCAACGGGCTATGTATTGAAGATCAGG-TAGC 1172
Query 1296 AGAAGCAAATCGATTATTTCAGAGGATGAAGAATGAGAGAATTTTTCCGAGCTCTGTGAC 1355
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1173 AGAAGCAAATCGATTATTTCAGAAGATGAAGAATGAGAGAATTTTTCCGAGCTCTGCGAC 1232
Query 1356 TTACAATTCGCTGATTCATGGGTTTTGTAAAGAGTACAATATAGAGAAAGCTCTGGATTT 1415
|||||| |||||||||||||||| ||||||||| |||||||| ||| |||||||||||||
Sbjct 1233 TTACAACTCGCTGATTCATGGGTATTGTAAAGAATACAATATGGAGCAAGCTCTGGATTT 1292
Query 1416 GTGCTCTGAGATGACATCAAGTGGGGTAGAACTCAACATCATAACCTTTTCTACTTTGAT 1475
|||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1293 GTGCTCTGAGATGACAGCAAGTGGTGTAGAACCCAACATCATAACCTTTTCTACTTTGAT 1352
Query 1476 CGACGGTTACTGCAAAGTGAGAAACATAAAAGCTGCAATGGGCTTGTACTTCGAGATGAC 1535
||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1353 CGATGGTTACTGCAATGTGAGAGACATAAAAGCTGCAATGGGCTTGTACTTCGAGATGAC 1412
Query 1536 CATTAAAGGTATAGTTCCTGATGTTGTGACCTACACAACTTTGATTGATGCGCATTTCAA 1595
||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1413 CATCAAAGGTATAGTTCCTGATGTTGTGACCTACACAGCTTTGATTGATGCACATTTCAA 1472
Query 1596 GGAGGCCAACATGAAAGAAGCACTCAGACTGTACAGTGACATGCTAGAGGCTGGAATTCA 1655
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct 1473 GGAGGCCAACATGAAAGAAGCACTCAGGCTGTATAGTGACATGCTAGAGGCAGGAATCCA 1532
Query 1656 CCCCAATGATCACACGTTCGCTTGCCTAGTAGATGGATTCTGGAAAGAAGGGCGACTCTC 1715
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1533 CCCCAATGATCACACGTTCGCTTGCCTAGTAGATGGATTCTGGAAAGAAGGACGACTCTC 1592
Query 1716 TGATGCCATCGATTTTTATCTAGAAAACAATCAAGCTGCAACCGGTAAATCCATTTTCCA 1775
|| ||||||||||||||||| ||||||||||||| | | | |
Sbjct 1593 TGTTGCCATCGATTTTTATCAAGAAAACAATCAA-C---A---G--A------------- 1630
Query 1776 GAGGAGCTGCTGGAAAT-ATGTGGGGTTTACATGCTTGATTGAAGGGTTATGTCAGAACG 1834
| | ||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1631 G-G-AGCTGTTGGAA-TCATGTGGGGTTTACATGCTTGATTGAAGGGTTGTGTCAGAACG 1687
Query 1835 GCTACATTCTTAGAGGTAGCAGATTCTTCTCAGACATGAGATCCGGCGGGGTAACCCCTG 1894
||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1688 GCTACATTCTTAGAGCTAGCAGATTCTTCTCAGACATGAGATCCTGCGGGATAACCCCTG 1747
Query 1895 ACATATGGAGTTACGTATCGATGTTAAAGGCCCACCTCCGAGAAAAGCGTATTACAGATA 1954
||||||| |||||||| || |||||||||| |||||||| ||||||||||||||| ||||
Sbjct 1748 ACATATGCAGTTACGTTTCAATGTTAAAGGGCCACCTCCAAGAAAAGCGTATTACTGATA 1807
Query 1955 CAATGATGTTGCACTGTGACATGATCAAAACTGGGATATTGCCAAACCTTATGGTGAATC 2014
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1808 CAATGATGTTGCAGTGTGACATGATCAAAACTGGGATATTGCCAAACCTTTTGGTGAATC 1867
Query 2015 AATTGCTAGCCATGTTTTATCAAGAGAATGGATATCTAAGATCAGCTTGTTTCTTGACCA 2074
|||||||||||| |||||| |||| |||||||||| ||| |||||||||||| |||||||
Sbjct 1868 AATTGCTAGCCAGGTTTTACCAAGCGAATGGATATGTAAAATCAGCTTGTTTTTTGACCA 1927
Query 2075 ATTCAAGTCGTTTG 2088
||||||||||||||
Sbjct 1928 ATTCAAGTCGTTTG 1941
> AT5G61410.1 | Symbols: RPE, EMB2728 | D-ribulose-5-phosphate-3-epimerase
| chr5:24683606-24686105 REVERSE LENGTH=1408
Length=1408
Score = 211 bits (114), Expect = 2e-53
Identities = 134/143 (94%), Gaps = 4/143 (3%)
Strand=Plus/Minus
Query 2099 TCAAAAACAC--ATGTAACAGCATATTTCTTATTACAGAGTTTCATTGCAAAATGTATGG 2156
|||||||||| |||||||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 1374 TCAAAAACACATATGTAACAACATATTTCTTATCACAGTGTTTCATTGCAAAATGTATGG 1315
Query 2157 AATCTGCATATCCTCAATTTACAAGACAATGGTACAGAATAGTATAGAGGAGCCTACTTT 2216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 AATCTGCATATCCTCAATTTACAAGACAATGGTACAGAATAGTATAGAGGAGCCTACTTT 1255
Query 2217 GTAGATATAT-AGATTGATTCTT 2238
| |||||| | || |||||||||
Sbjct 1254 GAAGATAT-TGAGTTTGATTCTT 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111194207175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5