BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950897
Length=886
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61410.1 | Symbols: RPE, EMB2728 | D-ribulose-5-phosphate-3-... 1448 0.0
> AT5G61410.1 | Symbols: RPE, EMB2728 | D-ribulose-5-phosphate-3-epimerase
| chr5:24683606-24686105 REVERSE LENGTH=1408
Length=1408
Score = 1448 bits (784), Expect = 0.0
Identities = 852/885 (96%), Gaps = 3/885 (0%)
Strand=Plus/Plus
Query 2 TTGAATCTTTGATT-CGGACATGTCGACCTCCGCCGCTTCCTTGTGTTGTTCATCAACCC 60
|||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 250 TTGAGTCTTTGATTAGGGACATGTCAACCTCCGCCGCTTCCTTGTGTTGTTCATCAACCC 309
Query 61 AGGTCAATGGGTTTGGTCTTAGGCCTGAAAGGTCGCTTCTTTACCAACCCACTTCGTTTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 310 AGGTCAATGGGTTTGGTCTTAGGCCTGAAAGGTCGCTTCTTTACCAACCCACTTCCTTTT 369
Query 121 CTTTCTCCAGAAGGAGAAGTCATGGAATTGTCAAGGCCTCAGCTCGGGTTGATAAGTTTT 180
|||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct 370 CTTTCTCCAGAAGGAGAACTCATGGAATTGTCAAGGCCTCATCTCGGGTTGATAGGTTTT 429
Query 181 CCAAAAGTGATATCATTGTTTCTCCCTCAATTCTCTCGGCTAATTTCGCCAAATTAGGCG 240
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 430 CGAAAAGTGATATCATTGTTTCTCCCTCTATTCTCTCGGCTAATTTCGCCAAATTAGGCG 489
Query 241 AGCAGGTAAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTGATGGATG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 490 AGCAGGTAAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTCATGGACG 549
Query 301 GTCGTTTTGTTCCCAACATTACTATCGGACCTCTCGTGGTTGATGCTTTGCGCCCTGTGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GTCGTTTTGTTCCCAACATTACTATCGGACCTCTCGTGGTTGATGCTTTGCGCCCTGTGA 609
Query 361 CAGATCTTCCGTTGGATGTTCATCTTATGATAGTGGAACCCGAGCAGAGAGTACCGGATT 420
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 610 CAGATCTTCCTTTGGATGTTCATCTGATGATAGTGGAACCCGAGCAGAGAGTACCGGATT 669
Query 421 TCATCAAAGCAGGTGCAGATATAGTCAGTGTACATTGTGAACAGCAATCGACTATCCATT 480
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 670 TCATCAAAGCAGGTGCAGATATTGTCAGTGTACATTGTGAACAGCAATCCACCATCCATT 729
Query 481 TGCATCGTACCGTCAATCAAATAAAAAGCTTAGGGGCTAAAGCTGGAGTTGTCCTAAACC 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 730 TGCATCGTACCGTCAATCAAATAAAAAGCTTAGGGGCTAAAGCTGGAGTTGTTCTAAACC 789
Query 541 CTGGAACCCCATTGACTGCAATAGAATATGTCTTGGATGTTGTGGATCTGGTCTTGATCA 600
||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 790 CTGGAACCCCATTGAGTGCAATAGAATATGTCTTGGATATGGTGGATCTGGTCTTGATCA 849
Query 601 TGTCGGTCAACCCCGGTTTTGGTGGACAGAGCTTTATCGAAAGCCAAGTAAAGAAAATCT 660
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 850 TGTCGGTCAACCCTGGTTTTGGTGGACAGAGCTTTATTGAAAGCCAAGTAAAGAAAATCT 909
Query 661 CGGACTTGAGAAAAATGTGTGCAGAAAAGGGAGTAAACCCATGGATTGAAGTTGATGGTG 720
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 910 CGGACTTGAGGAAAATGTGTGCAGAGAAGGGAGTAAACCCATGGATTGAAGTTGATGGTG 969
Query 721 GTGTCACTCCAGCGAACGCTTACAAGGTTATTGAGGCTGGAGCAAATGCTCTAGTGGCTG 780
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 970 GTGTCACTCCAGCGAATGCGTACAAGGTTATTGAGGCTGGAGCAAATGCTCTAGTGGCTG 1029
Query 781 GATCAGCTGTATTTGGAGCTAAGGACTACGCAGAAGCTATAAAAGGAATTAAGGCCAGCA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 GATCAGCTGTATTTGGAGCTAAGGACTACGCAGAAGCTATAAAAGGAATTAAGGCCAGCA 1089
Query 841 AGAGG-CCAGAAGCTGTAGCTGTGTAATGTGAAGAAACAACAAGC 884
| | | |||| ||||||||||||||||||||||| |||| |||||
Sbjct 1090 A-ACGACCAGCAGCTGTAGCTGTGTAATGTGAAGCAACAGCAAGC 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43251600567
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5