BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950898
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61420.2 | Symbols: MYB28, HAG1 | myb domain protein 28 | ch... 1735 0.0
AT5G07690.1 | Symbols: MYB29, ATMYB29, PMG2 | myb domain protei... 420 2e-116
AT5G07700.1 | Symbols: MYB76, AtMYB76 | myb domain protein 76 |... 399 2e-110
AT3G01140.1 | Symbols: MYB106, NOK, AtMYB106 | myb domain prote... 139 5e-32
AT3G01142.1 | Symbols: | other RNA | chr3:46718-48296 FORWARD ... 91.6 2e-17
> AT5G61420.2 | Symbols: MYB28, HAG1 | myb domain protein 28 |
chr5:24689151-24690797 REVERSE LENGTH=1427
Length=1427
Score = 1735 bits (939), Expect = 0.0
Identities = 1074/1137 (94%), Gaps = 18/1137 (2%)
Strand=Plus/Plus
Query 23 aaTGTCAAGAAAGCCATGTTGCGTCGGAGAAGGCTTGAAGAAAGGAGCATGGACCACCGA 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AATGTCAAGAAAGCCATGTTGCGTCGGAGAAGGCTTGAAGAAAGGAGCATGGACCACCGA 61
Query 83 GGAGGACAAGAAACTCATCTCTTACATCCACGACCACGGAGAGGGAGGCTGGCGCGACAT 142
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 62 GGAGGACAAGAAACTCATCTCTTACATCCACGACCACGGCGAGGGAGGCTGGCGCGACAT 121
Query 143 TCCCCAAAAAGCTGGCTTGAAGCGGTGTGGAAAGAGTTGTAGACTGCGATGGACCAATTA 202
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 122 TCCCCAAAAAGCTGGGTTGAAACGGTGTGGAAAGAGTTGTAGACTGCGATGGACCAACTA 181
Query 203 CCTTAAACCTGAGATCAAAAGAGGCGAGTTTAGTTCAGAGGAAGAGCAGATTATCATCAT 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CCTTAAACCTGAGATCAAAAGAGGCGAGTTTAGTTCAGAGGAAGAGCAGATTATCATCAT 241
Query 263 GCTTCATGCTTCTCGTGGCAACAAGTGGTCGGTAATAGCGAGACATTTACCTAGAAGAAC 322
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 242 GCTTCATGCTTCTCGTGGCAACAAGTGGTCGGTCATAGCGAGACATTTACCTAGAAGAAC 301
Query 323 AGACAACGAGATCAAGAACTACTGGAACACGCATCTCAAAAAACGTTTGATCGAACAGGG 382
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 302 AGACAACGAGATCAAGAACTACTGGAACACGCATCTCAAAAAACGTTTGATGGAACAGGG 361
Query 383 TCTTGATCCCGTGACTCACAAGCCACTAGCTTCTAGTTCCAACCCTACGGTTGATGAGAA 442
| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 362 TATTGATCCCGTGACTCACAAGCCACTGGCTTCTAGTTCCAACCCTACGGTCGATGAGAA 421
Query 443 TTTAAATTCCCTAAATGACTCTAGTTCCGACAAGCAGTACTCCCGGTCGAGCTCAATGCC 502
||| ||||||| ||||| |||||||||||||||||| |||||||| ||||||||||||||
Sbjct 422 TTTGAATTCCCCAAATGCCTCTAGTTCCGACAAGCAATACTCCCGATCGAGCTCAATGCC 481
Query 503 TACTCTGTCTCGTCCTCTTCCATCCAGTTGCAACATGGTTTCCAAGGTCTCCGAGATTAG 562
| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 482 TTTTCTGTCTCGTCCTCCTCCATCCAGTTGCAACATGGTTTCCAAGGTCTCCGAGCTTAG 541
Query 563 CAGCAATGATGGGACACCGGTGCAAGGTAGTTCCTTGAGTTGCAAGAAACGTTTCAAGAA 622
||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 542 CAGCAATGATGGGACACCGATTCAAGGCAGTTCCTTGAGTTGCAAGAAACGTTTCAAGAA 601
Query 623 ATCGAGTTCTACGTCAAGGCTATTGAACAAAGTTGCTGCTAAGGCCACTTCCATCAAAGA 682
||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 602 ATCAAGTTCTACATCAAGGCTCTTGAACAAAGTTGCGGCTAAGGCCACTTCCATCAAAGA 661
Query 683 TATATTGTCGGCTTCCATGGAAGGTAGCTTGAGTGCTACTACCATGTCACATGCAAGCTT 742
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 662 TATATTGTCGGCTTCCATGGAAGGTAGCTTGAGTGCTACTACAATATCACATGCAAGCTT 721
Query 743 CTTTAATGGCTTCACTGAGCAGATTCGCAATGGAGAGGATAGTTCTAACACATCCCTGAC 802
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 722 TTTTAATGGCTTCACTGAGCAGATTCGCAATGAAGAGGATAGTTCTAACACATCCCTGAC 781
Query 803 AAATACTCTTGCCGAATTCGACCCCTTATCCCCATCCTCGTTGTACCCTGAGCATGAGAT 862
|||||||||||| ||||| || ||||| |||||||| ||||||||||| || ||||||||
Sbjct 782 AAATACTCTTGCTGAATTTGATCCCTTCTCCCCATCATCGTTGTACCCCGAACATGAGAT 841
Query 863 CAATGCTACTTCTGATCTCAACATGGACCAAGATTTCGATTTTTCACAATTTTTCGAAAA 922
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 842 CAATGCTACTTCTGATCTCAACATGGACCAAGATTACGATTTTTCACAATTTTTCGAAAA 901
Query 923 ACTCGGAGGAGATAACCACAATGAAGAGAACAGTATGAATGTAGAGTACAGTCATGATCT 982
| |||||||||||||||||||||| |||||||||||||||| | | | || ||
Sbjct 902 ATTCGGAGGAGATAACCACAATGAGGAGAACAGTATGAATG-A---T-C--TC-----CT 949
Query 983 CCTTCTGTCCGATGTTTCCCAAGAAGTCTCATCAACTAGCGTTGATGATCAAGACAATAT 1042
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 --TA-TGTCCGATGTTTCCCAAGAAGTCTCATCAACTAGCGTTGATGATCAAGACAATAT 1006
Query 1043 GGTAGGAAACTTCGAGGGGTGGTCAAATTATCTT---GACCATACCGATTTTATGTATGA 1099
|||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct 1007 GGTAGGAAACTTCGAGGGATGGTCAAATTATCTTCTTGACCATACCAATTTTATGTATGA 1066
Query 1100 CACCGACTCGGACTCGCTCGAAAAGCATTTCATATGACTCTTCATATCCAAACAGAA 1156
||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1067 CACCGACTCAGACTCGCTTGAAAAGCATTTCATATGAGTCTTCATATCCAAACAGAA 1123
> AT5G07690.1 | Symbols: MYB29, ATMYB29, PMG2 | myb domain protein
29 | chr5:2446764-2448543 FORWARD LENGTH=1595
Length=1595
Score = 420 bits (227), Expect = 2e-116
Identities = 346/402 (86%), Gaps = 14/402 (3%)
Strand=Plus/Plus
Query 16 Gaaaaa-aa-aTGTCAAGAAAGCCATGTTGCGTCGGAGAAGG-CTTGAAGAAAGGAGCAT 72
|||||| || |||||||||||||||||||| || |||||||| | |||||||||||||||
Sbjct 317 GAAAAACAAGATGTCAAGAAAGCCATGTTGTGTGGGAGAAGGAC-TGAAGAAAGGAGCAT 375
Query 73 GGACCACCGAGGAGGACAAGAAACTCATCTCTTACATCCACGACCACGGAGAGGGAGGCT 132
|||| |||| || ||||||||||||||||||||||| || || ||||| || |||||||
Sbjct 376 GGACTGCCGAAGAAGACAAGAAACTCATCTCTTACATTCATGAACACGGTGAAGGAGGCT 435
Query 133 GGCGCGACATTCCCCAAAAAGCTGG-CTTGAAGCGGTGTGGAAAGAGTTGTAGACTGCGA 191
|||| |||||||||||||||||||| | | || || |||||||||||||||||| |||||
Sbjct 436 GGCGTGACATTCCCCAAAAAGCTGGAC-TAAAACGATGTGGAAAGAGTTGTAGATTGCGA 494
Query 192 TGGACCAATTACCTT-AAACCTGAGATCAAAAGAGGCGAGTTTAGTTCA-GAGGAAGAGC 249
||| | || || || |||||||| ||||| ||||| |||||||| | | ||||| || |
Sbjct 495 TGGGCTAACTA-TTTGAAACCTGACATCAAGAGAGGAGAGTTTAGCT-ATGAGGAGGAAC 552
Query 250 AGATTATCATCATGCTTCATGCTTCTCGTGGCAACAAGTGGTCGGTAATAGCGAGACATT 309
|||||||||||||||| || |||||||| |||||||||||||| || |||||||||||||
Sbjct 553 AGATTATCATCATGCTACACGCTTCTCGCGGCAACAAGTGGTCAGTCATAGCGAGACATT 612
Query 310 TACCTAGAAGAACAGACAACGAGATCAAGAACTACTGGAACACGCATCTCAAAAAACGTT 369
| || | ||||||||| |||||||| ||||||||||||||||||||||||||||| | |
Sbjct 613 TGCCCAAAAGAACAGATAACGAGATTAAGAACTACTGGAACACGCATCTCAAAAAGC-TC 671
Query 370 -TGATCGA-ACAGGGTCTTGATCCCGTGACTCACAAGCCACT 409
||||||| | |||| | ||||||||||| |||||||||||
Sbjct 672 CTGATCGATA-AGGGAATCGATCCCGTGACCCACAAGCCACT 712
> AT5G07700.1 | Symbols: MYB76, AtMYB76 | myb domain protein 76
| chr5:2450325-2451578 FORWARD LENGTH=1017
Length=1017
Score = 399 bits (216), Expect = 2e-110
Identities = 340/399 (85%), Gaps = 12/399 (3%)
Strand=Plus/Plus
Query 24 ATGTC-AAGAAAGCCATGTTGCGTCGGAGAAGG-CTTGAAGAAAGGAGCATGGACCACCG 81
||||| |||| | |||| ||| |||||||||| | ||||||||||||||||||| || |
Sbjct 1 ATGTCAAAGAGA-CCATATTGTATCGGAGAAGGAC-TGAAGAAAGGAGCATGGACTACAG 58
Query 82 AGGAGGACAAGAAACTCATCTCTTACATCCACGACCACGGAGAGGGAGGCTGGCGCGACA 141
| ||||| || |||||||||||||| |||||||||||||| || ||||||||||| ||||
Sbjct 59 AAGAGGATAAAAAACTCATCTCTTATATCCACGACCACGGTGAAGGAGGCTGGCGTGACA 118
Query 142 TTCCCCAAAAAGCT-GGCTTGAAGCGGTGTGGAAAGAGTTGTAGACTGCGATGGACCAAT 200
|||| |||||||| ||| |||| ||||||||||||||||||||| | || ||||| ||
Sbjct 119 TTCCAGAAAAAGCTGGGC-TGAAACGGTGTGGAAAGAGTTGTAGATTACGGTGGACTAAC 177
Query 201 TACCTT-AAACCTGAGATCAAAAGAGGCGAGTTTAGTTCA-GAGGAAGAGCAGATTATCA 258
|| || ||||| || ||||| ||||| |||||||| | | |||||||||||||||||||
Sbjct 178 TA-TTTGAAACCAGATATCAAGAGAGGAGAGTTTAGCT-ATGAGGAAGAGCAGATTATCA 235
Query 259 TCATGCTTCATGCTTCTCGTGGCAACAAGTGGTCGGTAATAGCGAGACATTTACCTAGAA 318
||||||||||||| ||||||||||| |||||||| || ||||| |||||||| || | ||
Sbjct 236 TCATGCTTCATGCATCTCGTGGCAATAAGTGGTCTGTCATAGCTAGACATTTGCCAAAAA 295
Query 319 GAACAGACAACGAGATCAAGAACTACTGGAACACGCATCTCAAAAAACGTTTGATCGAAC 378
|||| || |||||| |||| ||||| |||||||| |||||||| |||||||| |||||
Sbjct 296 GAACGGATAACGAGGTCAAAAACTATTGGAACACACATCTCAAGAAACGTTTAATCGATG 355
Query 379 AGGGTC-TTGATCCCGTGACTCACAAGCCACTAGCTTCT 416
| || | ||||||||||||| ||||||||||||||||||
Sbjct 356 ATGG-CATTGATCCCGTGACACACAAGCCACTAGCTTCT 393
> AT3G01140.1 | Symbols: MYB106, NOK, AtMYB106 | myb domain protein
106 | chr3:46396-48296 REVERSE LENGTH=1543
Length=1543
Score = 139 bits (75), Expect = 5e-32
Identities = 195/250 (78%), Gaps = 20/250 (8%)
Strand=Plus/Plus
Query 166 GGTGTGGAAAGAGTTGTAGACTGC-GATGGACCAATTACCTTAA-ACCTGAGATCAAAAG 223
|||||||||||||||| ||||| | ||||||| || |||| ||| |||||| ||||| ||
Sbjct 425 GGTGTGGAAAGAGTTGCAGACT-CAGATGGACTAACTACC-TAAGACCTGACATCAAGAG 482
Query 224 AGGCGAGTTTA--GTTCAGAGGAAGAGCAGATTATCA-TCATGCTTCATGCTTCTCGT-G 279
|||| | || | || || | ||||| || | |||| ||| || || || |||| | |
Sbjct 483 AGGCAAATTCACTGTACA-A-GAAGAACAAACCATCATTCA-ACTCCACGC-TCTCCTCG 538
Query 280 GCAACAAGTGGTCGGTAATAGCGAGACATTTACCTAGAAGA--ACAGACAACGAGATCAA 337
| |||| |||||| | || || | |||||||| | |||| |||||||||||||||||
Sbjct 539 GAAACAGGTGGTCAGCGATTGCAACTCATTTACC-A-AAGAGGACAGACAACGAGATCAA 596
Query 338 GAACTACTGGAACACGCATCTCAAA-AAACGTTTGATCGAACA-GGGTCTTGATCCCGTG 395
||||||||||||||| || || || |||||| ||||| || | ||| | ||||| |||
Sbjct 597 GAACTACTGGAACACACA-CTTGAAGAAACGTCTGATCAAA-ATGGGGATAGATCCAGTG 654
Query 396 ACTCACAAGC 405
||||||||||
Sbjct 655 ACTCACAAGC 664
> AT3G01142.1 | Symbols: | other RNA | chr3:46718-48296 FORWARD
LENGTH=1579
Length=1579
Score = 91.6 bits (49), Expect = 2e-17
Identities = 87/104 (84%), Gaps = 8/104 (8%)
Strand=Plus/Minus
Query 306 CATTTACCTAGAAGA--ACAGACAACGAGATCAAGAACTACTGGAACACGCATCTCAAA- 362
|||||||| | |||| |||||||||||||||||||||||||||||||| || || ||
Sbjct 734 CATTTACC-A-AAGAGGACAGACAACGAGATCAAGAACTACTGGAACACACA-CTTGAAG 678
Query 363 AAACGTTTGATCGAACA-GGGTCTTGATCCCGTGACTCACAAGC 405
|||||| ||||| || | ||| | ||||| |||||||||||||
Sbjct 677 AAACGTCTGATCAAA-ATGGGGATAGATCCAGTGACTCACAAGC 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56726615850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5