BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950935
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61720.1 | Symbols: | Protein of unknown function (DUF1216)... 1882 0.0
> AT5G61720.1 | Symbols: | Protein of unknown function (DUF1216)
| chr5:24801554-24803169 FORWARD LENGTH=1403
Length=1403
Score = 1882 bits (1019), Expect = 0.0
Identities = 1141/1200 (95%), Gaps = 8/1200 (1%)
Strand=Plus/Plus
Query 1 AAGAAT--aaaaaagaaaaa-aaatgggaaaaaTTTCGTTAGCGGTATGTCTAACGTTGC 57
|||||| |||||| ||||| |||||||||||||||| |||||| |||||||||||||||
Sbjct 45 AAGAATAAAAAAAAAAAAAAGAAATGGGAAAAATTTCATTAGCGATATGTCTAACGTTGC 104
Query 58 TTGTCACATTAAGCACTGTTTATGAAACACAAGGGACGTTCTCATTACCCCTTTACTTGA 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 TTGTCACATTAAGCACTGTTTATGAAACACAAGGGACGTTCTCATTACCCCTTTACTTGA 164
Query 118 AAAATTTCCCCAAAGTGGGCAAAGACTATGAGGCTTTCGCAAACAAAGGTATATCGGACT 177
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 AAAATTTCCCCAAACTGGGCAAAGACTATGAGGCTTTCGCAAACAAAGGTATATCGGACT 224
Query 178 TCTTGGGTGAACTGGAGGGTATGTGTCCTAAAACCGCAGAGTTCAAGGATTTCTTTGAAA 237
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 TTTTGGGTGACCTAGAGGGTATGTGTCCTAAAACCGCAGAGTTCAAGGATTTCTTTGAAA 284
Query 238 AGTTGAAGGATTACATGGCCTCCTTCAATTCGGCATCACCCGGGTCAAAAGACAACCTGT 297
| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||
Sbjct 285 ACTTGAAGGATTACATGGCCTTCTTCAATTCAGCAGCACCCGGGTCAAAAGACAACCAGT 344
Query 298 TCGAGATGT-CAGTAAAATCTGAAAAGCTGTTCAAGGCTATGTCTGCTTTCAACAGTAGT 356
||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 345 TCGAGATGTTC-GTAAAATCTGAAAAGCTGTTCAAGGCTTTGTCTGCTTTCAACAGTAGT 403
Query 357 AACGGCGGAACATCAGAGGATTCGTGGAAGCTGGTGGATGGCTTGTTGTCAATGGGTAAA 416
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 404 AAAGGCGGAACATCAGAGGATTCGTGGAAGCTGGTGGATGGATTGTTGTCAATGGGTAAA 463
Query 417 GGTTTGGTTGAGATGAAGAAGAGCGGTTCGAAGGAGATAACTTTTGAACAGAGAAGAGAT 476
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 464 GGTTTGGTTGAGATGAAGAAGAGCGGTTCGAAGGAGATAACTTTTGAAGAGAGAAGAGAT 523
Query 477 CTGATCAGTTCTATGGTGAAATGGGCTAGAGCTATCGGTCTATTCGTGAAGGCGGCCTCT 536
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 524 CTGATCAGTTCTATGGTGAAATGGGCTAGAGCCATCGGTCTATTCGTGAAGGCGGCCTCT 583
Query 537 GAAGATAAAGGACAATCTATTGATCTGGCATCTTTTGGGATCGACTATGACAACCATGTA 596
|||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 584 GAAGATAAAGGACAGTCTATTGATCTGGCATCTTTTGGGATTGACTATGACAACAATGTA 643
Query 597 GAATCCCCTTTTTCAAAAAGAGCTATGTATGAAAAACAAGGAACGTTCTCATTACCCCAT 656
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 644 GAATCCCCTTTTTCAAAAAGAGCTATGTATGAAACACAAGGAACGTTCTCATTACCTCAT 703
Query 657 TACTTGAAGAATGCCCCCAAAATGGGCAAAGACATTGAGCCTTTCGCTTACAATGGTATG 716
||| |||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 704 TACGTGAAGAATACCCCCAAAATGGGCAAAGCCATTGAGCCTTTCGCTTACAAAGGTATG 763
Query 717 TCGGACTTCTTGGGTAGCCTAGAGAGTAAGTGTCCTGCGACACCAGAGTTCCAGGATTTC 776
|||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 764 TCGGACTTCTTGGGTAGCCTAGAGAGCAAGTGTCCTGCGACACCAGAGTTCAAAGATTTC 823
Query 777 TTTGTAAAGCTGGAGGACTACATGGCCTGCTTCAAGTTGGTATCACCCGAATCAAAAGAC 836
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 824 TTTGTAAAGTTGGAGGACTATATGGCCTGCTTCAAGTTGGTATCACCCGAATCAAAATTC 883
Query 837 GACATGTCAGTGAAATCTGAGAAGCTCTTCAGGGCTATGATTTTATTGGATGGTACTAAA 896
|| ||| |||||||||| || |||||||||| ||||||||||| ||||||||||||||||
Sbjct 884 GAGATGGCAGTGAAATCGGATAAGCTCTTCACGGCTATGATTTCATTGGATGGTACTAAA 943
Query 897 GGCGGAACATCAGTGGATTCGTGGAGGATGCTTGATGGTATGTTGTCAATGGGAAAAGTT 956
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 GGCGGA---TCAGTGGATTCGTGGAGGATGCTTGATGGTATGTTGTCAATGGGAAAAGTT 1000
Query 957 TTGGTTGAGATGAAGAAGAGCGGTTCCAAGGAGATAACTTTTGAACAGAGAAGAGATCTG 1016
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TTGGTTGATATCAAGAAGAGCGGTTCCAAGGAGATAACTTTTGAACAGAGAAGAGATCTG 1060
Query 1017 ATCAGTTCTATGGTGAAATGGGCTAGAGCTATCGGTCTATTCGTGAAGACGGCCTCTGGG 1076
||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
Sbjct 1061 ATCAGCTCTATGGTGAAATGGGCTAGAGCTATCGGCCTATTCGTGAAGGCGGCCTCTGAG 1120
Query 1077 AATAAAGGAAAACCTATTGATCTAGCACCTTTTGGAATTGATTATGAAAACAATGTCGGA 1136
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 CGTAAAGGAAAATCTATTGATCTAGCACCTTTTGGAATTGATTATGAAAACAATGTCGGA 1180
Query 1137 AATGGGAAAGGTAACTATAGAACCGGCCCTGTTCTGATAGACGACGGCAGCGAGCTCTAA 1196
||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1181 AATGGAAAAGGTAACTTTAGAACCGGCCCTGTTCTCATAGACGACGGCAGCGAGCTCTAA 1240
Score = 460 bits (249), Expect = 1e-128
Identities = 440/528 (83%), Gaps = 29/528 (5%)
Strand=Plus/Plus
Query 624 TATGAAAAACAAGGAACGTTCTCATTACCCCATTACTTGAAGAATGCCCCCAAAATGGGC 683
||||||| |||||| |||||||||||||||| ||||||||| ||| ||||||| |||||
Sbjct 125 TATGAAACACAAGGGACGTTCTCATTACCCCTTTACTTGAAAAATTTCCCCAAACTGGGC 184
Query 684 AAAGACAT-TGAGCCTTTCGCTTACAATGGTATGTCGGACTTCTTGGGTAG-CCTAGAGA 741
|||||| | |||| ||||||| |||| ||||| |||||||| |||||| | |||||||
Sbjct 185 AAAGAC-TATGAGGCTTTCGCAAACAAAGGTATATCGGACTTTTTGGGT-GACCTAGAGG 242
Query 742 GTAAGTGTCCTGCGACAC-CAGAGTTCCAGGATTTCTTTGTAAAGC-TGGAGGACTACAT 799
||| ||||||| || | |||||||| |||||||||||| ||| | || |||| |||||
Sbjct 243 GTATGTGTCCTAAAAC-CGCAGAGTTCAAGGATTTCTTTG-AAAACTTGAAGGATTACAT 300
Query 800 GGCCTGCTTCAAGTT-GGTATCACCCGAATCAAAAGACGA-CATG-TC---A-G-T-G-- 848
||||| |||||| || | | |||||| ||||||||| | || | || | | | |
Sbjct 301 GGCCTTCTTCAA-TTCAGCAGCACCCGGGTCAAAAGACAACCA-GTTCGAGATGTTCGTA 358
Query 849 AAATCTGAGAAGCTCTTCAGGGCTATGAT-T-TTATTGGATGGTACTAAAGGCGGAACAT 906
|||||||| ||||| |||| |||| || | | | || | ||| ||||||||||||||
Sbjct 359 AAATCTGAAAAGCTGTTCAAGGCTTTG-TCTGCT-TTCAACAGTAGTAAAGGCGGAACAT 416
Query 907 CAGTGGATTCGTGGAGGATGCTTGATGGTA-TGTTGTCAATGGGAAAAGTTTTGGTTGAG 965
||| ||||||||||| | || | ||||| | ||||||||||||| |||| ||||||||||
Sbjct 417 CAGAGGATTCGTGGAAGCTGGTGGATGG-ATTGTTGTCAATGGGTAAAGGTTTGGTTGAG 475
Query 966 ATGAAGAAGAGCGGTTCCAAGGAGATAACTTTTGAACAGAGAAGAGATCTGATCAGTTCT 1025
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 476 ATGAAGAAGAGCGGTTCGAAGGAGATAACTTTTGAAGAGAGAAGAGATCTGATCAGTTCT 535
Query 1026 ATGGTGAAATGGGCTAGAGCTATCGGTCTATTCGTGAAGACGGCCTCTGG-GAATAAAGG 1084
|||||||||||||||||||| |||||||||||||||||| ||||||||| || ||||||
Sbjct 536 ATGGTGAAATGGGCTAGAGCCATCGGTCTATTCGTGAAGGCGGCCTCTGAAGA-TAAAGG 594
Query 1085 AAAACCTATTGATCTAGCACCTTTTGGAATTGATTATGAAAACAATGT 1132
| | |||||||||| ||| ||||||| ||||| ||||| ||||||||
Sbjct 595 ACAGTCTATTGATCTGGCATCTTTTGGGATTGACTATGACAACAATGT 642
Score = 442 bits (239), Expect = 4e-123
Identities = 434/525 (83%), Gaps = 26/525 (5%)
Strand=Plus/Plus
Query 78 TATGAAACACAAGGGACGTTCTCATTACCCCTTTACTTGAAAAATTTCCCCAAAGTGGGC 137
|||||||||||||| |||||||||||||| | |||| |||| ||| ||||||| |||||
Sbjct 671 TATGAAACACAAGGAACGTTCTCATTACCTCATTACGTGAAGAATACCCCCAAAATGGGC 730
Query 138 AAAGACTA-TGAGGCTTTCGCAAACAAAGGTATATCGGACTTCTTGGGTGA-ACTGGAGG 195
|||| | | |||| ||||||| |||||||||| ||||||||||||||| | || |||
Sbjct 731 AAAG-CCATTGAGCCTTTCGCTTACAAAGGTATGTCGGACTTCTTGGGT-AGCCTAGAGA 788
Query 196 GTATGTGTCCTAAAAC-CGCAGAGTTCAAGGATTTCTTTGAAAAGTTGAAGGATTACATG 254
| | ||||||| || | |||||||||| |||||||||| ||||||| |||| || |||
Sbjct 789 GCAAGTGTCCTGCGACAC-CAGAGTTCAAAGATTTCTTTGTAAAGTTGGAGGACTATATG 847
Query 255 GCCTCCTTCAA-TTCGGCATCACCCGGGTCAAAAGACAACCTGTTCGAGATGTCAGTAAA 313
|||| |||||| || || |||||||| || | | || ||||||||| |||| ||
Sbjct 848 GCCTGCTTCAAGTT-GGTATCACCCGAATC---A-A-AA----TTCGAGATGGCAGTGAA 897
Query 314 ATCTGAAAAGCTGTTCAAGGCTATG-TCTGCTTTCAACAGTAGTAACGGCGGAACATCAG 372
||| || ||||| |||| ||||||| | | | || | ||| ||| ||||| |||||
Sbjct 898 ATCGGATAAGCTCTTCACGGCTATGAT-TTCATTGGATGGTACTAAAGGCGG---ATCAG 953
Query 373 AGGATTCGTGGAAGCTGGTGGATGGCT-TGTTGTCAATGGGTAAAGGTTTGGTTGAGATG 431
||||||||||| | || | ||||| | ||||||||||||| |||| ||||||||| ||
Sbjct 954 TGGATTCGTGGAGGATGCTTGATGG-TATGTTGTCAATGGGAAAAGTTTTGGTTGATATC 1012
Query 432 AAGAAGAGCGGTTCGAAGGAGATAACTTTTGAACAGAGAAGAGATCTGATCAGTTCTATG 491
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1013 AAGAAGAGCGGTTCCAAGGAGATAACTTTTGAACAGAGAAGAGATCTGATCAGCTCTATG 1072
Query 492 GTGAAATGGGCTAGAGCTATCGGTCTATTCGTGAAGGCGGCCTCTGAA-GATAAAGGACA 550
||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |
Sbjct 1073 GTGAAATGGGCTAGAGCTATCGGCCTATTCGTGAAGGCGGCCTCTGAGCG-TAAAGGAAA 1131
Query 551 ATCTATTGATCTGGCATCTTTTGGGATCGACTATGACAACCATGT 595
|||||||||||| ||| ||||||| || || ||||| ||| ||||
Sbjct 1132 ATCTATTGATCTAGCACCTTTTGGAATTGATTATGAAAACAATGT 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5