BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950940
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61770.2 | Symbols: PPAN | PETER PAN-like protein | chr5:248... 1554 0.0
> AT5G61770.2 | Symbols: PPAN | PETER PAN-like protein | chr5:24815608-24817611
FORWARD LENGTH=1253
Length=1253
Score = 1554 bits (841), Expect = 0.0
Identities = 903/933 (97%), Gaps = 3/933 (0%)
Strand=Plus/Plus
Query 1 GTTTGGTGAGATAAG---CATAAATGGGTCGTTTCAAAAACAATAAGAAGAGTAGGGTCA 57
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 74 GTTTGGTGAGATAAGAATAATAAATGGGTCGTTTCAAAAACAATAAGAAGAGTAGGGTCA 133
Query 58 TTGTGAAGCCTATTCCGAAGAAAAATCAAGAGGATGTTAGTCATGTCACTGGGGATAAGA 117
||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 TTGGGAAACCTATTGCGAAGAAAAATCAAGAGGATGTTAGTCATGTCACTGGGGATAAGA 193
Query 118 TTCCCAAGAGTTTTGTGTTTTCAAGAATGAAACTTCCTGGCCCTGTTAAACAACTTCAGA 177
|||||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||
Sbjct 194 TTCCCAAGAGTTTTGTCTTCTCAAGAATGAAACTTGCTGGCCCTGTTAAACAACTCCAGA 253
Query 178 TGGATTTGAGGAAGCTCATGCTTCCCTACACTGCTCTCAGTCTTAAGGAGAAGAAGCGGA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 TGGATTTGAGGAAGCTCATGCTTCCCTACACTGCTCTCAGTCTTAAGGAGAAGAAGCGGA 313
Query 238 ACACTTTGAGGGACTTTTTGAATGTATCAGGTCCAATGGGTGTTACACATTTCCTTATGC 297
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 ACACTTTAAGGGACTTTTTGAATGTATCAGGTCCAATGGGTGTTACACATTTCCTTATGC 373
Query 298 TTTCAAAAACAGCGTCTTCACTGTCTCTAAGAGTAGCAAGAACTCCGCAGGGCCCGACTC 357
|||| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 374 TTTCGAAAACAGCGTCTTCACTGTCTCTTAGAGTAGCAAGAACCCCTCAGGGCCCGACTC 433
Query 358 TTACCTTTAAAATTCATCAGTATTCCCTAGCATCAGATATAGCTCAGTCTCAGCTTCGAC 417
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 434 TTACCTTCAAAATTCATCAGTATTCCTTAGCATCAGATATAGCTCAGTCTCAGCTTCGAC 493
Query 418 CTAGATGTCCCCAAGATCTTTTCAAGAGTCCTCCTTTGATTGTTCTTTCTGGATTCGGTT 477
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 494 CTAGATGTCCTCAAGATCTTTTCAAGAGTCCTCCTTTGATTGTCCTTTCTGGATTCGGTT 553
Query 478 CTCAGGAGTTGCATCTGAAACTAGCAACGATTATGTTTCAGAATATATTCCCAGCTATTG 537
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 554 CTCAAGAGTTGCATCTGAAACTGGCAACGATTATGTTTCAGAATATATTCCCAGCTATTG 613
Query 538 ATATTAACACTGTCAAGCTCTCCACCTGCCAGAGATTAGTACTCTTGAACTACAACAAAG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 ATATTAACACTGTCAAGCTCTCCACCTGCCAGAGATTAGTACTCTTGAACTACAACAAAG 673
Query 598 ATACAAAGCTCATTGATTTCCGGCATTATTCTATAAGACTTCAGCCTGTTGGAGTATCTC 657
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 ACACCAAGCTCATTGATTTCCGGCATTATTCTATAAGACTTCAGCCTGTTGGAGTATCTC 733
Query 658 GTAGGATCAGAAAGTTTGTGCAAAATCATCAGGTTCCCGATCTTAGGAATCTGCAGGATG 717
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 734 GTAGGATCAGAAAGTTTGTGCAAAATCATCAGGTTCCAGATCTTAGGAATCTGCAGGATG 793
Query 718 TTAGTGATTTTGTCACCAAGGCTGGTTATGGATCAGAGAGCGAAGGAGATGAAGAAGCGG 777
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 794 TTAGTGATTTTGTCACCAAGGCTGGTTACGGATCAGAGAGCGAAGGAGATGAAGAAGCGG 853
Query 778 CAACCGTGACACTATCATCTGATCTAGGCCGAGTTAACAAAGGTTCCACCAAGAGCGCCG 837
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 854 CAACAGTGACACTATCATCTGATCTAGGCCGAGTTAACAAAGGTGCCACCAAGAGCGCAG 913
Query 838 TGAAGCTGCAAGAAATTGGACCAAGAATGACTATGCAACTCGTTAAAGTGGAGGAAGGAT 897
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 TGAAACTGCAAGAAATTGGACCAAGAATGACTATGCAACTCGTTAAAGTGGAGGAAGGAT 973
Query 898 TGTGTACAGGAGGAATCATATTCAGTGAATATG 930
|||||||||||||||||||||||||||||||||
Sbjct 974 TGTGTACAGGAGGAATCATATTCAGTGAATATG 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46717756710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5