BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950941
Length=2992
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61780.1 | Symbols: Tudor2, AtTudor2, TSN2 | TUDOR-SN protei... 4870 0.0
AT5G07350.2 | Symbols: Tudor1, AtTudor1, TSN1 | TUDOR-SN protei... 3038 0.0
AT2G11271.1 | Symbols: | unknown protein; Has 30201 Blast hits... 132 2e-29
> AT5G61780.1 | Symbols: Tudor2, AtTudor2, TSN2 | TUDOR-SN protein
2 | chr5:24821258-24826969 FORWARD LENGTH=3552
Length=3552
Score = 4870 bits (2637), Expect = 0.0
Identities = 2885/3004 (96%), Gaps = 20/3004 (1%)
Strand=Plus/Plus
Query 1 GGTCTTAGCCAATCACCAACATGGCGACTGGGGCAGCAACTGAGAACCAGTGGCTCAAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GGTCTTAGCCAATCACCAACATGGCGACTGGGGCAGCAACTGAGAACCAGTGGCTCAAAG 306
Query 61 GGAGAGTGAAGGCTGTTACCTCCGGAGACTGCTTGGTGATCACGGCTTTGACCCACAACA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GGAGAGTGAAGGCTGTTACCTCCGGAGACTGCTTGGTGATCACGGCTTTGACCCACAACA 366
Query 121 GAGCTGGCCCACCTCCTGAAAAGACCATCACTCTTTCTTCTCTTATGGCTCCTAAAATGG 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 367 GAGCTGGCCCACCTCCGGAAAAGACCATCACTCTTTCTTCTCTTATGGCTCCTAAGATGG 426
Query 181 CTCGCAGGGGAGGTATAGATGAGCCTTTTGCATGGGAAAGCAGGGAGTTTCTGAGGAAGC 240
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 427 CTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGAAAGCAGGGAGTTTCTAAGGAAGC 486
Query 241 TTTGCATTGGAAAGGAGGTTGCTTTCAAAGTGGATTACAAAGTGGAAGCTATTGCCGGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 487 TTTGCATTGGAAAGGAGGTTGCTTTCAAAGTGGATTACAAAGTGGAAGCAATTGCCGGAA 546
Query 301 GAGAATTTGGCTCGGTTTATCTTGGTCACGAAAATCTTGCTAAGCTTGTTGTTCAAAATG 360
||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||||||||
Sbjct 547 GAGAATTTGGCTCTGTTTACCTTGGTAACGAAAATCTTGCGAAGCTTGTTGTTCAAAATG 606
Query 361 GCTGGGCAAAGGTCAGAGGGCCAGGTCAGCAGAATCAGGATAAGGTTAGTCCTTACATTG 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GCTGGGCAAAGGTCAGACGGCCAGGTCAGCAGAATCAGGATAAGGTTAGTCCTTACATTG 666
Query 421 CGGAGCTGGTACAGCTTGAAGAGCAGGCTCAGCAGGAAGGATTTGGTCGTTGGAGCAAGG 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CGGAGCTGGAACAGCTTGAAGAGCAGGCTCAGCAGGAAGGATTTGGTCGTTGGAGCAAGG 726
Query 481 TTCCTGGTGCTGCTGAGGCATCTATCAGAAATCTTCCTCCTTCTGCTGTTGGAGATTCTG 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 727 TTCCTGGTGCTGCTGAGGCATCTATCAGAAATCTTCCTCCTTCTGCCGTTGGAGATTCTG 786
Query 541 GCAATTTTGATGCTATGGGTCTTTTAGCCGCAAGTAAAGGCAAACCCATGGAAGGTATTG 600
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GCAATTTTGATGCCATGGGTCTTTTAGCCGCAAGTAAAGGCAAACCCATGGAAGGTATTG 846
Query 601 TTGAGCAAGTCCGTGATGGCAGTACCCTTCGGGTTTATCTTCTTCCGGAATTTCAGTTTG 660
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 847 TTGAGCAAGTCCGTGATGGCAGCACCATTCGGGTTTATCTTCTTCCGGAATTTCAGTTTG 906
Query 661 TGCAAGTATTTGTTGCTGGACTCCAGGCTCCATCGATGGGAAGGAGACAATCTACACAAG 720
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 907 TTCAAGTATTTGTTGCTGGACTCCAGGCTCCATCGATGGGAAGGAGACAATCAACACAAG 966
Query 721 AAGCTGTTGTTGAGCCGGATGTTACAGCAACTTCGAATGGAGATGCTTCTGCTGAGACGC 780
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 AAGCTGTCGTTGATCCTGATGTTACAGCAACTTCGAATGGAGATGCTTCTGCTGAGACGC 1026
Query 781 GTGGTCCTCTAACATCAGCTCAGAGACTCGCTGCCTCAGCAGCATCGTCTGTTGAGGTTT 840
|||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1027 GTGGCCCTCTAACAACAGCTCAGAGACTTGCTGCCTCAGCAGCATCGTCTGTTGAGGTTT 1086
Query 841 CCTCTGATCCGTTTGCAATGGAAGCCAAGTACTTTACTGAGCTTCGTGTGCTTAATAGAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 CCTCTGATCCGTTTGCAATGGAAGCCAAGTACTTTACTGAGCTTCGTGTGCTTAATAGAG 1146
Query 901 ATGTTCGTATTGTTCTTGAAGGCGTTGACAAATTCAACAATCTGATTGGGTCAGTATACT 960
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1147 ATGTTCGTATTGTTCTTGAAGGCGTTGACAAGTTCAACAATCTGATTGGGTCAGTATACT 1206
Query 961 ATTCCGATGGGGATACAGTTAAAGACTTGGGTTTGGAGCTGGTTGAAAATGGTCTTGCTA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 ATTCCGATGGGGATACAGTTAAAGACTTGGGTTTGGAGCTGGTTGAAAATGGTCTTGCTA 1266
Query 1021 AGTACGTTGAGTGGAGTGCCAACATGTTGGATGAAGAAGCCAAAAAGAAATTGAAAGCTA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 AGTACGTTGAGTGGAGTGCCAACATGTTGGATGAAGAAGCCAAAAAGAAATTGAAAGCTA 1326
Query 1081 CAGAACTCCAATGCAAGAAAAACCGGGTGAAAATGTGGGCAAACTATGTCCCTCCAGCTA 1140
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1327 CAGAACTTCAATGCAAGAAAAACCGGGTGAAAATGTGGGCAAACTACGTCCCTCCAGCTA 1386
Query 1141 GCAACTCTAAGGCAATTCATGACCAGAACTTTACCGGAAAGGTAGTGGAAGTTGTGAGCG 1200
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1387 GCAACTCCAAGGCAATTCATGACCAGAATTTTACCGGAAAGGTAGTGGAAGTTGTGAGCG 1446
Query 1201 GGGACTGCTTAGTAGTTGCTGATGATTCTATCCCATTCGGAAGCCCAATGGCAGAGCGCA 1260
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1447 GGGACTGCTTAGTAGTTGCTGATGATTCTATCCCATTCGGGAGCCCAATGGCGGAGCGCA 1506
Query 1261 GAGTTTGCCTTTCCAGTATTAGGGCTCCTAAAATGGGTAACCCACGCAGAGAGGAGAAAC 1320
||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1507 GAGTTTGTCTTTCCAGTATCAGGTCTCCTAAAATGGGTAACCCACGCAGAGAGGAGAAAC 1566
Query 1321 CTGCCCCTTATGCGTGGGAAGCCAAGGA-TCTTCTGAGACTAAAGCTTATCGGAAAGGAG 1379
|||||||||||||| | ||||||||||| | ||||||||| |||||||||||||| ||||
Sbjct 1567 CTGCCCCTTATGCGCGCGAAGCCAAGGAGT-TTCTGAGACAAAAGCTTATCGGAATGGAG 1625
Query 1380 GTTATTGTTCAAATGGAATACTCAAGGAAGATTAGCCCAGGAGATGGTGTTACTACTTCT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626 GTTATTGTTCAAATGGAATACTCAAGGAAGATTAGCCCAGGAGATGGTGTTACTACTTCT 1685
Query 1440 GGAGCTGGTGATAGGGTCATGGATTTTGGCTCAGTGTTCCTTCCATC-CACTACCAAGGG 1498
|||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||
Sbjct 1686 GGAGCTGGTGATAGGGTCATGGATTTCGGCTCAGTGTTCCTTCCATCTC-CTACCAAGGG 1744
Query 1499 TGATGCAGATGTAGCAGCTGCAGCAACTCCTGGAGCGAATATTGCTGAACTCATTATTGC 1558
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1745 TGATACAGCTGTAGCAGCTGCAGCAACTCCTGGAGCGAATATTGCTGAACTCATTATTTC 1804
Query 1559 CCGTGGCT-ATGGGACTGTGGTTAGACATCGTGACTTTGAAGAGAGATCGAACCATTATG 1617
|||||||| | |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1805 CCGTGGCTTA-GGGACTGTGGTTCGACATCGTGACTTTGAAGAGAGGTCGAACCATTATG 1863
Query 1618 ACGCTCTCCTGGCTGCTGAAGCTCGTGCTGTTGCTGGGAAGAAGGGA-ATCCATTCTGCA 1676
||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||
Sbjct 1864 ACGCTCTCCTGGCTGCTGAAGCTCGTGCTATTGCTGGGAAGAAGA-ATATCCATTCTGCA 1922
Query 1677 AAGGATTCTCCAGCCATGCACATTACAGACCTGACTGTGGCCTCGGCGAAGAAGGCTAAA 1736
||||||||||||||| | |||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1923 AAGGATTCTCCAGCCCTACACATTGCAGACCTGACTGTGGCCTCGGCCAAGAAGGCTAAA 1982
Query 1737 GATTTCCTGCCATCCCTG-AGCAGAGGCAAG-AGAATATCTGCCGTTGTGGAATATGTCC 1794
|||||||||||||||||| || ||| ||| ||| |||||||||||||||||||||| |
Sbjct 1983 GATTTCCTGCCATCCCTGCAG-AGAATCAACCAGA-TATCTGCCGTTGTGGAATATGTGC 2040
Query 1795 TGAGTGGACATCGGTTCAAGCTATACATTCCAAAGGAAACGTGCAGCATTGCCTTTGCAT 1854
| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 2041 TAAGTGGACATCGGTTCAAGCTATACATTCCAAAAGAATCGTGCAGCATTGCCTTTGCAT 2100
Query 1855 TCTCTGGTGTCAGATGTCCTGGCCGTGGCGAACCCTATTCGGAAGAAGCTATTGCTTTAA 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 TCTCTGGTGTCAGATGTCCTGGCCGTGGCGAACCCTATTCGGAAGAAGCTATTGCTTTAA 2160
Query 1915 TGAGACGTAAAATCATGCAGAGAGATGTCGAGATTGTAGTTGAAACTGTGGATAGAACCG 1974
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2161 TGAGACGTAAGATCATGCAGAGAGATGTCGAGATTGTAGTTGAAAATGTGGATAGAACCG 2220
Query 1975 GTACTTTCTTGGGATCAATGTGGGAG------TCAAAGACCAACGCAGGAACGTATCTTC 2028
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 2221 GTACTTTCTTGGGATCAATGTGGGAGAAAAACTCAAAGACGAACGCAGGAACATATCTTC 2280
Query 2029 TTGAAGCTGGCCTGGCAAAAATGCAGACTGGCTTTGGTGCAGACAGGATTCCCGAAGCTC 2088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2281 TTGAAGCTGGCCTGGCAAAAATGCAGACTGGCTTTGGTGCAGACAGGATTCCCGAAGCTC 2340
Query 2089 ATATTCTTGAATTGGCAGAGCGATCTGCTAAAAATCAGAAACTGAAGATTTGGGAAAACT 2148
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2341 ATATTCTTGAAATGGCAGAACGATCTGCTAAAAATCAGAAACTGAAGATTTGGGAAAACT 2400
Query 2149 ATGTTGAAGGAGAGGAAGTCGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAA 2208
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2401 ATGTTGAAGGAGAGGAAGTAGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAA 2460
Query 2209 CATTAAAGGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGATTCTATGTTCAGACGGTTG 2268
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2461 CACTAAAGGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTTG 2520
Query 2269 GTGATCAAAAAGTAGCTTCGATTCAAAACCAGCTTGCATCTCTGAGTCTTAAAGATGCTC 2328
| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 2521 GCGATCAAAAAGTAGCTTCGATTCAAAACCAGCTTGCAGCTCTGAGTCTTAAAGACGCTC 2580
Query 2329 CCATTATTGGATCATTTAATCCTAAGAGGGGTGACATCGTCCTTGCACAGTTTAGCCTTG 2388
||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 2581 CCATTATTGGATCGTTTAATCCTAAGAAGGGTGACATCGTCCTTGCACAATTTAGCCTCG 2640
Query 2389 ATAACTCCTGGAACCGTGCAATGATTGTTGATGGACCTCGAGGAGCAGTTCAATCTCCAG 2448
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2641 ATAACTCCTGGAACCGCGCAATGATTGTTAATGGACCTCGAGGAGCAGTTCAATCTCCAG 2700
Query 2449 AAGAGAAATTCGAAGTGTTCTACATCGATTATGGAAACCAAGAAACGGTTCCATACAGCG 2508
| ||| |||| |||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2701 AGGAGGAATTTGAAGTGTTCTACATCGATTATGGAAACCAAGAAATAGTTCCGTACAGCG 2760
Query 2509 CAATTCGCCCTGTGGACCCTTCAGTATCCTCAGCACCAGGGCTCGCACAGCTCTGCAGAC 2568
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2761 CAATACGCCCTGTGGACCCTTCAGTATCCTCAGCACCAGGGCTAGCACAGCTCTGCAGAC 2820
Query 2569 TTGCCTACATAAAAGTTCCAGGCCTGGAAGAGGACTTTGGTCCTGATGCCGGAGAGTATT 2628
||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct 2821 TTGCCTACATAAAAGTTCCAGGCAAGGAAGAGGACTTTGGTCGTGACGCCGGAGAGTATT 2880
Query 2629 TGCATACCGTAACACTCGGAAGTGGTAAAGAGTTCAAGGCAGTGGTAGAGGAAAGAGATA 2688
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 2881 TGCATACCGTAACACTCGAAAGTGGTAAAGAGTTCAGGGCAGTGGTAGAGGAAAGAGATA 2940
Query 2689 CTTCAGGAGGCAAAGTGAAGGGCCAAGGAACTGGAACCGAGCTTGCTGTAACTCTCATCG 2748
||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct 2941 CTTCAGGAGGCAAAGTGAAGGGCCAAGGAACTGGAACTGAGCTCGTTGTAACTCTCATCG 3000
Query 2749 CTGTCGATGATGAGATCTCTGTCAATGCAGCAATGCTTCAGGAAGGAATAGCGAGGATGG 2808
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3001 CTGTCGATGATGAGATCTCTGTCAATGCAGCAATGCTTCAGGAAGGAATAGCCAGGATGG 3060
Query 2809 AGAAACGCAGGAAATGGGAACCGAAAGACAAGCAAGCTGCTCTTGATGCACTTGAGAAGT 2868
|||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 3061 AGAAACGCAGGAGATGGGAACCGAAAGACAAGCAAGCCGCTCTTGATGCTCTTGAGAAGT 3120
Query 2869 TCCAAGACGAAGCTCGCAAATCTAGGACCGGAATCTGGCAGTACGGAGACATCCAATCTG 2928
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 3121 TCCAAGACGAAGCTCGCAAATCTAGGACCGGAATCTGGGAGTACGGAGATATCCAATCTG 3180
Query 2929 ATGATGAGGACACTGTTCCAGTCAGGAAACCGGGTCGCGGGTAAGTGTTTCACAGCGGTG 2988
|||||||||||| ||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 3181 ATGATGAGGACAATGTTCCAGTCAGGAAACCGGGTCGCGGGTAAGT-TT-CACACCGGTG 3238
Query 2989 AAAA 2992
||||
Sbjct 3239 AAAA 3242
> AT5G07350.2 | Symbols: Tudor1, AtTudor1, TSN1 | TUDOR-SN protein
1 | chr5:2320021-2325419 REVERSE LENGTH=3182
Length=3182
Score = 3038 bits (1645), Expect = 0.0
Identities = 2562/2990 (86%), Gaps = 121/2990 (4%)
Strand=Plus/Plus
Query 40 CTGAGAACCAGTGGCTCAAAGGGAGAGTGAAGGCTGTTACCTCCGGAGACTGCTTGGTGA 99
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 172 CTGAGAACCAATGGCTTAAAGGAAGAGTGAAGGCTGTTACCTCCGGAGACTGCTTAGTGA 231
Query 100 TCACGGCTTTGACCCACAACAGAGCTGGCCCACCTCCTGAAAAGACCATCACTCTTTCTT 159
|||||||||||| ||||||||||||||| || || || ||||||||||| ||| ||||||
Sbjct 232 TCACGGCTTTGAGCCACAACAGAGCTGGACCTCCACCGGAAAAGACCATTACTTTTTCTT 291
Query 160 CTCTTATGGCTCCTAAAATGGCTCGCAGGGGAGGTATAGATGAGCCTTTTGCATGGGAAA 219
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 292 CTCTTATGGCACCTAAGATGGCTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGAAA 351
Query 220 GCAGGGAGTTTCTGAGGAAGCTTTGCATTGGAAAGGAGGTTGCTTTCAAAGTGGATTACA 279
||| || ||| ||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 352 GCAAAGAATTTTTGAGGAAACTTTGCATAGGAAAGGAGGTTGCATTCAAAGTGGATTACA 411
Query 280 AAGTGGAAGCTATTGCCGGAAGAGAATTTGGCTCGGTTTAT-CTTGGTC-ACGAAAATCT 337
| |||||||||||||| ||||||||||||||||| |||| | ||||| | |||| |||||
Sbjct 412 AGGTGGAAGCTATTGCTGGAAGAGAATTTGGCTCTGTTT-TCCTTGG-CAACGAGAATCT 469
Query 338 TGCTAAGCTTGTTGTTCAAAA-TGGCTGGGCAAAGGTCAGAGG-GCCAGGTCAGCAGAAT 395
|||||||||||||||| |||| ||| ||||||||||| || || ||||||||||||||||
Sbjct 470 TGCTAAGCTTGTTGTT-AAAACTGGTTGGGCAAAGGTTAG-GGAGCCAGGTCAGCAGAAT 527
Query 396 CAGGATAAGGTTAGTCCTTACATTGCGGAGCTGGTACAGCTTGAAGAGCAGGCTC-AGCA 454
||||| |||||||||||||||||| ||| || ||||||||||||||| ||| | ||||
Sbjct 528 CAGGACAAGGTTAGTCCTTACATTAAAGAGTTGCTACAGCTTGAAGAGCTGGC-CAAGCA 586
Query 455 GGAAGGATTTGGTCGTTGGAGCAAGGTTCCTGGTGCTGCTGAGGCATCTATCAGAAATCT 514
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 GGAAGGATATGGTCGTTGGAGCAAGGTTCCTGGTGCTGCTGAGGCATCTATCAGAAATCT 646
Query 515 TCCTCCTTCTGCTGTTGGAGATTCTGGC-AATTTTGATGCTATGGGTCTTTTAGCCGCAA 573
|||||||||||| |||| |||||| || |||||||| ||||| |||||||| ||||
Sbjct 647 TCCTCCTTCTGCCATTGGGGATTCT-GCTGGCTTTGATGCCATGGGCCTTTTAGCTGCAA 705
Query 574 GTAAAGGCAAACCCATGGAAGGTATTGTTGAGCAAGTCCGTGATGGCAGTACCCTTCGGG 633
|| ||||| || |||||||||||||| |||||||| |||||||| ||||| ||||||
Sbjct 706 ACAAGGGCAAGCCTATGGAAGGTATTGTAGAGCAAGTGCGTGATGGAAGTACTATTCGGG 765
Query 634 TTTATCTTCTTCCGGAATTTCAGTTTGTGCAAGTATTTGTTGCTGGACTCCAGGCTCCAT 693
||||||||||||| || || ||||||||||||||||||||||| ||| ||||||||||||
Sbjct 766 TTTATCTTCTTCCAGAGTTCCAGTTTGTGCAAGTATTTGTTGCGGGAGTCCAGGCTCCAT 825
Query 694 CGATGGGAAGGAGACAATCTACACAA--GAAGCTGTTGTTGAGCCGGATGTTACAGCA-- 749
| ||||||||| | || | ||| || |||| |||||||||| | | ||| ||| |
Sbjct 826 CAATGGGAAGGCG--AA-CCACA-AATGGAAG-TGTTGTTGAGAC--A-GTTCCAG-ATG 876
Query 750 ACTTCGAATGGAGATGCTTCTGCTGAGACGCGTGGTCCTCTAAC-ATCAGCTCAGAGACT 808
| |||||||||||| |||||||||| | || ||||||||||| | |||||||||||||
Sbjct 877 A-GCCGAATGGAGATGTTTCTGCTGAGTCACGAGGTCCTCTAACGA-CAGCTCAGAGACT 934
Query 809 CGCTGCCTCAGCAGCATCGTCTGTTGAGGTTTCCTCTGATCCGTTTGCAA-TGGAAGCCA 867
|||||||| |||||||||||||| ||||||||||||||||| ||||||| | |||||||
Sbjct 935 TGCTGCCTCTGCAGCATCGTCTGTCGAGGTTTCCTCTGATCCATTTGCAACT-GAAGCCA 993
Query 868 AGTACTTTACTGAGCTTCGTGTGCTTAATAGAGATGTTCGTATTGTTCTTGAAGGCGTTG 927
|||||||||| || | ||||| |||| |||||||||||| |||||||||||||||||||
Sbjct 994 AGTACTTTACCGAACACCGTGTTCTTAGTAGAGATGTTCGCATTGTTCTTGAAGGCGTTG 1053
Query 928 ACAAATTCAACAATCTGATTGGGTCAGTAT-ACTATTCCGATGGGGATACAGTTAAAGAC 986
|||||||||||||||||||||| ||||| | | ||||| |||||||| ||||||||||||
Sbjct 1054 ACAAATTCAACAATCTGATTGGTTCAGT-TCATTATTCTGATGGGGAAACAGTTAAAGAC 1112
Query 987 TTGGGTTTGGAGCTGGTTGAAAATGGTCTTGCTAAGTACGTTGAGTGGAGTGCCAACATG 1046
||||| |||||||| |||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 1113 TTGGGGTTGGAGCTCGTTGAAAATGGTCTTGCTAAATTTGTTGAATGGAGTGCCAACATG 1172
Query 1047 TTGGATGAAGAAGCCAA-AAAGAAATTGAAAGCTACAGAACTCCAATGCAAGAAAAACCG 1105
|||| || ||||| || ||| || ||||||||| ||||||| |||||||||||| |
Sbjct 1173 ATGGAGGAGGAAGCTAAGAAA-AAGTTGAAAGCTGCAGAACTTCAATGCAAGAAAGATAA 1231
Query 1106 GGTGAAAATGTGGGCAAACTATGTCCCTCCAGCTAGC-AACTCTAAGGCAATTCATGACC 1164
||| ||||||||||||||||| || |||||||||| | ||||||||||||||||||||||
Sbjct 1232 GGTTAAAATGTGGGCAAACTACGTTCCTCCAGCTA-CAAACTCTAAGGCAATTCATGACC 1290
Query 1165 AGAACTTTACCGGAAAGGTAGTGGAAGTTGTGAGCGGGGACTGCT-TAGTAGTTGCTGAT 1223
|||||||||| ||||||||||||||||| ||||| ||||| || | || ||||||| |||
Sbjct 1291 AGAACTTTACGGGAAAGGTAGTGGAAGTGGTGAGTGGGGATTG-TCTAATAGTTGCCGAT 1349
Query 1224 GATTCTATCCCATTCGGAAGCCCAATGGCAGAGCGCA-GAGTTTGCCTTTCCAGTATTAG 1282
||| || | ||||| || || ||| |||||| | | | || || ||||| ||||| ||
Sbjct 1350 GATGCTGTTCCATTTGGGAGTCCAGCAGCAGAGAG-ACGGGTCTGTCTTTCGAGTATCAG 1408
Query 1283 GGCTCCTAAAATGGGTAACCCACGCAGAGAGGAGAAACCTGCCCCTTATGCGT-GGGAAG 1341
|||| |||||||| |||||||| ||||| |||||||| || |||||||| | ||||||
Sbjct 1409 ATCTCCAAAAATGGGCAACCCACGTAGAGAAGAGAAACCAGCTCCTTATGC-TCGGGAAG 1467
Query 1342 CCAAG-G-ATCTTCTGAGACTAAAG-CTTATCGG-AAAGGAGGTTATTGTTCAAATGGAA 1397
|||| | || ||||||||| || | ||||| || ||| ||||||||||||||||||||
Sbjct 1468 -CAAGAGAAT-TTCTGAGAC-AACGACTTATTGGCAAA-CAGGTTATTGTTCAAATGGAA 1523
Query 1398 TACTCAAGG-AAGATTAGCCC-AGGAGATGGTGTTACTACTTCTGGAGCTGGTGATAGGG 1455
|| |||||| ||| | | ||| |||||||||| ||| || |||||||||| |||||||
Sbjct 1524 TATTCAAGGAAAG-TCA-CCCAAGGAGATGGTCCTACCACATCTGGAGCTGCTGATAGGT 1581
Query 1456 TCATGGATTTTGGCTCAGTGTTCCTTCCATCCACTACC-AAG--G---GTGATGCA--GA 1507
||||||||||||||||||||||||||||||| || || ||| | ||||| | ||
Sbjct 1582 TCATGGATTTTGGCTCAGTGTTCCTTCCATCTGCTGCCAAAGCCGATTCTGATGAAGTGA 1641
Query 1508 -TGTAGCA---GCTGCAGCAA-------C--T---CC---TGGAGCGAATATTGCTGAAC 1548
|| | || |||||||||| | | || ||| | |||||||||||| |
Sbjct 1642 CTGCACCACCTGCTGCAGCAATTGCTGGCAGTCAGCCGGTTGGTGTGAATATTGCTGAGC 1701
Query 1549 TCATTATTGCCCGTGGCTATGGGACTGTGGTTAGACATCGTGACTTTGAAGAGAGATCGA 1608
|| || ||| |||||| | ||| | ||||||||||||| | || ||||||||| |||| |
Sbjct 1702 TCGTTCTTGTCCGTGGTTTTGGAAATGTGGTTAGACATAGAGATTTTGAAGAGCGATCAA 1761
Query 1609 ACCATTATGACGCTCTCCTGGCTGCTGAAGCTCGTGCTGTTGCTGGGAAGAAGGGAATCC 1668
|||||||||| ||||| ||||||||||||||||||||| | ||||| ||||| |||||||
Sbjct 1762 ACCATTATGATGCTCTTCTGGCTGCTGAAGCTCGTGCTCTGGCTGGAAAGAAAGGAATCC 1821
Query 1669 ATTCTGCAAAGGATTCTCCAGCCATGCACATTACAGACCTGACTGTGGCCTCGGCGAAGA 1728
|||||||||| || ||||||||||||||||| |||||||| |||||| | | || ||||
Sbjct 1822 ATTCTGCAAAAGAATCTCCAGCCATGCACATCACAGACCTAACTGTGTCGGCAGCTAAGA 1881
Query 1729 AGGCTAAAGATTTCCTGCCATCCCTG-AGCAGAGGCAAGAGAATATCTGCCGTTGTGGAA 1787
| |||||||||||||||||||||||| | ||| || ||||||| | || |||||||||
Sbjct 1882 AAGCTAAAGATTTCCTGCCATCCCTGCA-AAGAATCAGGAGAATACCCGCTGTTGTGGAA 1940
Query 1788 TATGTCCTGAGTGGACATCGGTTCAAGCTATACATTCCAAAGGA-AACGTGCAGCATTGC 1846
|||||||| || ||||||||||| ||||| || || ||||| || ||| || ||||| ||
Sbjct 1941 TATGTCCTCAGCGGACATCGGTTTAAGCTTTATATCCCAAA-GATAACATGTAGCATAGC 1999
Query 1847 CTTTGCATTCTCTGGTGTCAGATGTCCTGGCCGTGGCGAACCCTATTCGGAAGAAGCTAT 1906
|||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2000 CTTTTCATTCTCTGGTGTCAGATGTCCTGGCCGTGGCGAACCTTATTCAGAAGAAGCTAT 2059
Query 1907 -TGCTTTAATGAGACGTAAAATCATGCAGAGAGATGTCGAGATTGTAGTTGAAACTGTGG 1965
| || |||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||
Sbjct 2060 CT-CTGTAATGAGACGTAGGATCATGCAGAGAGATGTTGAGATTGAAGTTGAAACCGTGG 2118
Query 1966 ATAGAACCGGTACTTTCTTGGGATCAATGTGGGAGTCAAAGACCAACGCAGG-AAC-GTA 2023
||||||||||||||||||||||||| |||||||| || | ||| |||| || || ||
Sbjct 2119 ATAGAACCGGTACTTTCTTGGGATCCATGTGGGAATCGAGGACAAACG-TGGCTACAGT- 2176
Query 2024 TCTTCTTGAAGCTGGCCTGGCAAAAATGCAGACTGGCTTTGGTGCAGACAGGATTC-CCG 2082
||| |||||||||||| | ||||||||||||||| |||||||||||||||||| || |||
Sbjct 2177 TCTGCTTGAAGCTGGCTTAGCAAAAATGCAGACTAGCTTTGGTGCAGACAGGA-TCGCCG 2235
Query 2083 AAGCTCATATTCTTGAATTGGCAGAGCGATCTGCTAAAAATCAGAAACTGAAGATTTGGG 2142
|||| ||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||
Sbjct 2236 AAGCACATCTTCTTGAACAGGCAGAGAGATCTGCTAAAAACCAGAAACTGAAGATTTGGG 2295
Query 2143 AAAACTATGTTGAAGGAGAGGAAGTCGT-AAACGGTAGTTCTAA-A--GTAGAAACCAGG 2198
||||||||||||||||||| |||||| | |||||| | | |||| | ||||||||||||
Sbjct 2296 AAAACTATGTTGAAGGAGAAGAAGTC-TCAAACGGAAATACTAACACCGTAGAAACCAGG 2354
Query 2199 CAGAAGGAAACATTAAAGGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGATTCTATGTT 2258
|| ||||| || ||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 2355 CAAAAGGAGACCTTAAAGGTTGTTGTTACAGAAGTACTTGGAGGTGGTCGGTTCTATGTT 2414
Query 2259 CAGA-CGGTTGGTGATCA-AAAAGTAGCTTCGATTCAAAACCAGCTTGCATC-TCTGAGT 2315
|| | | | ||| ||||| |||| ||||||||||||| |||||||||||||| | |||||
Sbjct 2415 CA-ATCTGCTGGAGATCAGAAAA-TAGCTTCGATTCAGAACCAGCTTGCATCAT-TGAGT 2471
Query 2316 CTTAAAGATGCTCCCATTATTGGATCATTTAATCCTAAGAGGGGTGACATCGTCCTTGCA 2375
||||||| ||||||||||| ||||| |||||||| ||||| ||||||||||||||||||
Sbjct 2472 ATTAAAGACGCTCCCATTATCGGATCCTTTAATCCAAAGAGAGGTGACATCGTCCTTGCA 2531
Query 2376 CAGTTTAGCCTTGATAACTCCTGGAACCGTGCAATGATTGTTGATGG-ACCTCGAGGAGC 2434
||||||||||||||||||||||||||||||||||||||||| || | ||| |||| |||
Sbjct 2532 CAGTTTAGCCTTGATAACTCCTGGAACCGTGCAATGATTGT-GACAGCACCCCGAGCAGC 2590
Query 2435 AGTTCAATCTCCAGAAGAGAAATTCGAAGTGTTCTACATCGATTATGGAAACCAAGAAAC 2494
|||||||| ||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 2591 GGTTCAATCCCCAGATGAAAAATTCGAAGTGTTCTACATCGATTATGGAAACCAAGAGAC 2650
Query 2495 GGTTCCATACAGCGCAATTC-GCCCTGTGGACCCTTCAGTATCCT-CAGCACCAGGGCTC 2552
||||||||||||||||| | | || | |||||||| ||||| | ||||||||||||||
Sbjct 2651 AGTTCCATACAGCGCAAT-CAGACCAATAGACCCTTCGGTATC-TGCAGCACCAGGGCTC 2708
Query 2553 GCACAGCTCTGCAGACTTGCCTACATAAAAGTTCCAGGCCTGGAAGAGGACTTTGGTCCT 2612
|| |||||||||||||||||||||||||| |||||| || ||||||| ||||||||||||
Sbjct 2709 GCTCAGCTCTGCAGACTTGCCTACATAAAGGTTCCAAGCTTGGAAGACGACTTTGGTCCT 2768
Query 2613 GATGCCGGAGAGTATTTGCATACCGTAACACTCGGAAGTGGTAAAGAGTTCAAGGCAGTG 2672
|| || ||||||||||||||||| ||||| || || ||||||||||||||||| ||||||
Sbjct 2769 GAAGCGGGAGAGTATTTGCATACTGTAACTCTGGGTAGTGGTAAAGAGTTCAAAGCAGTG 2828
Query 2673 GTAGAGGAAAGAGATACTTCAGGAGGCAAAGTGAA-GGGCCAAGGAACTGGAACCGAGCT 2731
|||| |||||||| || || ||||||||||| || |||| |||| |||||||| || |
Sbjct 2829 ATAGAAGAAAGAGACACATCTGGAGGCAAAGTCAAAGGGC-AAGGCACTGGAACTGAA-T 2886
Query 2732 T-GCTGTAACTCTCATCGCTGTCGATGATGAGATCTCTGTCAATGCAGCAATGCTTCAGG 2790
| | ||| |||||||| ||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 2887 TCGTTGTCACTCTCATTGCTGTTGATGATGAGATCTCTGTAAATGCTGCAATGCTTCAGG 2946
Query 2791 AAGGAATAGCGAGGATGGAGAAACG-CAGGAAATGGGAAC-CGAAAGACAAGCAAGCTGC 2848
||||||||||||| ||||||||||| ||| ||||||| | | |||| ||| ||||||||
Sbjct 2947 AAGGAATAGCGAGAATGGAGAAACGTCAG-AAATGGGGGCAC-AAAGGCAAACAAGCTGC 3004
Query 2849 TCTTGATGCACTT-GAGAAGTTCCAAGACGAAGCTCGCAAATCTAGGACCGGAATCTGGC 2907
||||||||| || |||||||||||||| ||||||||||| || || | ||||||||||
Sbjct 3005 TCTTGATGCT-TTAGAGAAGTTCCAAGAGGAAGCTCGCAAGTCGAGAATTGGAATCTGGC 3063
Query 2908 AGTACGGAGACATCCAATCTGATGATGAGGACACTGTTCCAGTCAGGAAA 2957
||||||| ||||| | || |||||||||||||||| ||| | ||| |||
Sbjct 3064 AGTACGGTGACATTGAGTCCGATGATGAGGACACTGGTCCGGCCAG-AAA 3112
> AT2G11271.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:4485414-4485539
REVERSE LENGTH=126
Length=126
Score = 132 bits (71), Expect = 2e-29
Identities = 90/99 (91%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 51 TGGCTCAAAGGGA-GAGTGAAGGCTGTTACCTCCGGAGACTGCTTGGTGATCACGGCTTT 109
||||| ||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 98 TGGCTTAAA-GGACGAGTGAAGGCTGTTACCTCCGGAGACTGCTTAGTGATCACGGCTTT 40
Query 110 GACCCACAACAGAGCTGGCCCACCTCCTGAAAAGACCAT 148
|| ||||||||||||||| || || || |||||||||||
Sbjct 39 GAGCCACAACAGAGCTGGACCTCCACCGGAAAAGACCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148744985995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5