BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950944
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61810.1 | Symbols: | Mitochondrial substrate carrier famil... 2342 0.0
AT5G07320.1 | Symbols: | Mitochondrial substrate carrier famil... 1262 0.0
> AT5G61810.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr5:24831619-24833902 REVERSE LENGTH=1828
Length=1828
Score = 2342 bits (1268), Expect = 0.0
Identities = 1400/1465 (96%), Gaps = 4/1465 (0%)
Strand=Plus/Plus
Query 1 TCGATTGATCGTTAATTAGCAATGGAGGCAGAGAAATCCAAGAAAAATCCGGTTAAGAAG 60
||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 147 TCGATTGATCGTTAACCAGCAATGGAGGCAGAGAAATCCAAGCAAAATCCGGGTAAGAAG 206
Query 61 CCCGTAGAGGCAACAATGGAGCATGTGTTGGTGGCATTACGAGAGACCAAGGAGGAGAGG 120
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 207 CCCGTAGAAGCAACAATGGAGCACGTGTTGGTGGCATTACGAGAGACCAAGGAGAAGAGA 266
Query 121 GAGACCAGAATTCGAAAACTGTTCGAATTCTTCGACAATTCGAAGTTAGGGTTCTTAGAC 180
|||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 GAGATCAGGATTCAAAAACTGTTCGAATTCTTCGACAATTCGAAGTTAGGGTTCTTAGAC 326
Query 181 GATACCCAGATCGAGAAAGGTTTGTCTTCGCTTAGTATTCCTCAAAATTATAGGTACGCT 240
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 327 GATACCCAGATCGAGAAAGGTTTGTCTTCGCTTAGTATTCCTCCAAAGTATAGGTACGCT 386
Query 241 AGTGATTTTCTTAAAGTCTGCGACGCGAATCGAGATGGGCGTGTGGATTACCAGGAGTTT 300
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 387 AGTGATTTTCTTAAAGTCTGCGACTCGAATCGAGATGGGCGTGTGGACTACCAGGAGTTT 446
Query 301 CGTCGTTACATGGACT-CTAAGGAGCTTGAGCTCTACAAGATCTTCCAGGCCATTGATGT 359
|||||||||||||| | |||| ||||||||| | |||||||| || |||||||||||| |
Sbjct 447 CGTCGTTACATGGA-TGCTAAAGAGCTTGAGTTGTACAAGATTTTTCAGGCCATTGATAT 505
Query 360 CGAACACAATGGCGACATTTGTCCAGAAGAGCTTTGGGAGGCTCTTGATAAAGCTGGCAT 419
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 506 TGAACACAATGGCGACATTTGTCCAGCGGAGCTTTGGGAGGCTCTTGATAAAGCTGGCAT 565
Query 420 TAAAATTAAAGATGAGGAACTCGCTTCTTTTATGGAGCATGTTGATAAGGACAACAACGG 479
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 566 TAAAATCAAAGATGAGGAACTTGCTTCTTTTATGGAGCATGTTGATAAGGACAACAACGG 625
Query 480 AATTATAACTTTTGAAGAGTGGAGGGATTTTCTTTTGCTTAACCCTCATGAAGCCACAAT 539
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 626 AATTATAACTTTTGAGGAGTGGAGGGATTTTCTTTTGCTAAACCCTCATGAAGCTACAAT 685
Query 540 TGAAAACATTTATCATCACTGGGAAAGAGTATGCTTAATTGACATTGGGGAACAAGCTGT 599
||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 686 TGAGAACATTTATCATCACTGGGAAAGAGTATGCTTAATAGACATTGGAGAGCAAGCTGT 745
Query 600 TATACCAGACGGTATAAGTACACACGCTCAAAGAAGCAAATTACTTCTCGCTGGAGGAAT 659
||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 746 TATACCAGATGGTATAAGTGCACACGCTCAAAGAAGCAAATTACTTCTCGCGGGAGGAAT 805
Query 660 AGCAGGAGCTGTTTCTAGAACCGCGACTGCGCCTCTGGACCGTCTGAAAGTTGCTTTGCA 719
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 806 AGCAGGGGCTGTTTCTAGAACCGCAACTGCGCCTCTGGACCGTCTGAAAGTTGCTCTGCA 865
Query 720 AGTTCAACGTACAAATTTGGGCGTTGTCCCGACCATTAAGAAAATATGGAGAGAAGATAA 779
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 866 AGTTCAACGGACAAATTTGGGTGTTGTCCCGACCATTAAGAAAATATGGAGAGAAGATAA 925
Query 780 GTTGTTGGGTTTCTTCAGAGGTAATGGGTTAAATGTAACGAAAGTCGCTCCTGAAAGCGC 839
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 926 GTTGTTGGGTTTCTTCAGAGGTAATGGGTTAAATGTAGCGAAAGTCGCTCCTGAAAGCGC 985
Query 840 CATAAAGTTTGCTGCTTATGAAATGCTTAAATCC-ATAATTGGGGGAGTGGATGGTGACA 898
|||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||||
Sbjct 986 TATAAAGTTTGCTGCTTATGAAATGCTGAAA-CCAATAATTGGGGGAGCGGATGGTGACA 1044
Query 899 TTGGTACAAGCGGGAGGCTTTTGGCTGGTGGATTGGCTGGTGCAGTGGCTCAAACAGCTA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TTGGTACAAGCGGGAGGCTTTTGGCTGGTGGATTGGCTGGTGCAGTGGCTCAAACAGCTA 1104
Query 959 TTTATCCTATGGATCTCGTGAAGACTCGGTTACAGACTTTTGTGAGTGAAGTTGGGACAC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 TTTATCCTATGGATCTCGTGAAGACTCGGTTACAGACTTTTGTGAGTGAAGTTGGGACAC 1164
Query 1019 CAAAGCTGTGGAAACTCACGAAGGATATTTGGATTCAAGAAGGACCCCGAGCTTTTTACA 1078
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 CAAAGCTGTGGAAACTCACAAAGGATATTTGGATTCAAGAAGGACCCCGAGCTTTTTACA 1224
Query 1079 GGGGTCTTTGTCCTTCTCTTATTGGGATTATACCTTACGCAGGAATTGACCTTGCTGCTT 1138
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1225 GGGGTCTTTGTCCTTCTCTAATTGGGATTATCCCTTACGCAGGAATTGACCTTGCTGCTT 1284
Query 1139 ACGAAACTCTTAAAGACTTATCAAGGTCACATTTTCTTCATGACACTGCCGAGCCAGGTC 1198
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1285 ACGAAACTCTTAAAGACTTATCAAGGGCACATTTTCTTCATGACACTGCGGAGCCAGGTC 1344
Query 1199 CTCTCATACAACTGGGATGTGGAATGACGTCTGGAGCTCTTGGAGCATCGTGTGTTTACC 1258
|| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1345 CTTTGATACAACTGGGATGTGGAATGACTTCTGGAGCTCTTGGAGCATCGTGTGTTTACC 1404
Query 1259 CATTACAGGTCATTAGAACAAGAATGCAAGCTGATATCTCAAAAACTAGCATGATCCAAG 1318
||||||||||||| |||||||||||||||||||||| ||||||||| |||||| |||||
Sbjct 1405 CATTACAGGTCATAAGAACAAGAATGCAAGCTGATAGCTCAAAAACAAGCATGGGCCAAG 1464
Query 1319 AGTTTCTGAAAACGCTAAGAGGCGAAGGTCTAAGAGGTTTTTACAGAGGAATCTTCCCCA 1378
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1465 AGTTTCTGAAAACGCTAAGAGGCGAAGGTCTAAAAGGTTTTTACAGAGGAATCTTCCCCA 1524
Query 1379 ACTTCTTCAAAGTCATTCCTTCCGCAAGCATTTCGTACCTTGTCTACGAGGCTATGAAGA 1438
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1525 ACTTCTTCAAAGTCATTCCTTCCGCAAGCATTTCGTACCTTGTCTACGAAGCTATGAAGA 1584
Query 1439 AAAATCTGGCCCTTGATTaaaaaaa 1463
||||||| |||||||||||||||||
Sbjct 1585 AAAATCTTGCCCTTGATTAAAAAAA 1609
> AT5G07320.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr5:2309911-2312287 FORWARD LENGTH=1982
Length=1982
Score = 1262 bits (683), Expect = 0.0
Identities = 1174/1407 (83%), Gaps = 50/1407 (4%)
Strand=Plus/Plus
Query 76 ATGGAGCATGTGT-TGGTGGCATTACGAGAGACCAA-GGAGGAGAGGGAGACCAGAATTC 133
||||||||||| | | |||| ||||| |||| ||| ||| ||||| |||| ||| ||||
Sbjct 395 ATGGAGCATGT-TCTATTGGCGTTACGTGAGA-CAATGGATGAGAGAGAGATCAGGATTC 452
Query 134 GAAAACTGTTCGAATTCTTCGACAATTCGAAGTTAGGGTTCTTAGACGATACCCAGATCG 193
| | |||| || ||||| || |||||||| |||||||||||||| || |||||||||
Sbjct 453 GTAGTTTGTTTGATTTCTTTGATAATTCGAATTTAGGGTTCTTAGATTATGCCCAGATCG 512
Query 194 AGAAA-GGT-TTGTCTTCGCTT-AGTATTCCTCAAAATTATAGGTACGCTAGTGATTT-T 249
| ||| ||| ||| |||||||| || ||||||| | || | ||||||||| ||||| |
Sbjct 513 A-AAAGGGTCTTG-CTTCGCTTCAG-ATTCCTCCTGAGTACAAGTACGCTAGAGATTTGT 569
Query 250 CTTAAAGTCTGCGACGCGAATCGAGATGGGCGTGTGGATTACCAGGAGTTTCGTCGTTAC 309
||| |||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 570 -TTAGAGTCTGCGACGCTAATCGAGATGGGCGTGTTGATTACCAGGAGTTTCGTCGATAC 628
Query 310 ATGGACT-CTAAGGAGCTTGAGCTCTACAAGATCTTCCAGGCCATTGATGTCGAACACAA 368
|| || | |||||||||||||||| |||| ||| ||||| ||||||||||| || || ||
Sbjct 629 ATTGA-TGCTAAGGAGCTTGAGCTATACAGGATTTTCCAAGCCATTGATGTTGAGCATAA 687
Query 369 TGGC-GACA-TTTGTCCAGAAGAGCTTTGGGAGGCTCTTGATAAAGCTGGCATTAAAATT 426
|||| | || |||| || || ||||||||||||||||||| ||| || |||||| | ||
Sbjct 688 TGGCTG-CATTTTG-CCTGAGGAGCTTTGGGAGGCTCTTGTTAAGGCCGGCATTGAGATC 745
Query 427 AAAGATGAGGAACTCGCTTC-TTTTATGGAGCATGTTGATAAGGACAACAACGGAATTAT 485
| |||||||||||||| || |||| ||||||||||||||||||||||||| |||| |||
Sbjct 746 GATGATGAGGAACTCGC-TCGTTTTGTGGAGCATGTTGATAAGGACAACAATGGAACTAT 804
Query 486 AACTTTTGAAGAGTGGAGGGATTTTCTTTTGCTTA-ACCCTCATGAAGCCACAATTGAAA 544
||| |||||||||||||| |||||||||||| ||| | |||||||||||||| ||||||
Sbjct 805 AACGTTTGAAGAGTGGAGAGATTTTCTTTTG-TTATATCCTCATGAAGCCACCCTTGAAA 863
Query 545 ACATTTATCATCACTGGGAAAGAGTATGCTTAATTGACATTGGGGAACAAGCTGTTATAC 604
|||| |||||||| |||||||| || ||||| || || |||||||| |||||||||||||
Sbjct 864 ACATATATCATCATTGGGAAAGGGTGTGCTTGATAGATATTGGGGAGCAAGCTGTTATAC 923
Query 605 CAGACGGTATAAGTACACACGCT-CAAAGAAGCAAATTACTTCTCGCTGGAGGAATAGCA 663
| || |||||||||| ||| | | ||||||||| ||||||||||||||||||| ||||
Sbjct 924 CGGATGGTATAAGTAAACATG-TGAAAAGAAGCAGATTACTTCTCGCTGGAGGACTAGCC 982
Query 664 GGAGCTGTTTCTAGAACCGCGACTGCGCCTCTGGACCGTCTGAAAGTTGCTTTGCAAGTT 723
||||||||||||||||| || ||||||||||| || |||||||| |||| ||||||||||
Sbjct 983 GGAGCTGTTTCTAGAACTGCAACTGCGCCTCTTGATCGTCTGAAGGTTGTTTTGCAAGTT 1042
Query 724 CAACGTACAAAT-TTGGGCGTTGTCCCGACCATTAAGAAAATATGGAGAGAAGATAAGTT 782
||| | || || ||| || ||||||| |||||||| ||||||||||||||||||||
Sbjct 1043 CAAAGGGCACATGCAGGG-GTCCTCCCGACAATTAAGAAGATATGGAGAGAAGATAAGTT 1101
Query 783 GTTGGGTTTCTTCAGAGGTAATGGGTTAAATGTAACGAAAGTCGCTCCTGAAAGCGCCAT 842
| |||||||||| |||||||||||||||||||| | ||| || ||||||||||| |||||
Sbjct 1102 GATGGGTTTCTTTAGAGGTAATGGGTTAAATGTCATGAAGGTTGCTCCTGAAAGTGCCAT 1161
Query 843 AAAG-TTTGCTGCTTATGAAATGCTTAAATCCATAATTGG-GGGAGTGGATGGTGACATT 900
||| |||| |||||| |||||||| ||| |||| ||||| ||| | ||||||||| |||
Sbjct 1162 TAAGTTTTG-TGCTTACGAAATGCTAAAACCCATGATTGGAGGG-GAGGATGGTGATATT 1219
Query 901 GGTACAAGCGGGAGGCTTTTGGCTGGTGGATTGGCTGGTGCAGTGGCTCAAACAGCTATT 960
|||||||| ||||| ||| |||| |||||| ||||||||||| |||||||||| ||||||
Sbjct 1220 GGTACAAGTGGGAGACTTATGGCAGGTGGAATGGCTGGTGCATTGGCTCAAACCGCTATT 1279
Query 961 TATCCTATGGATCTCGTGAAGACTCGGTTACAGACTTTTGTGAGTGAAGTTGGGA---CA 1017
|| |||||||||||||||||||||||||||||||||| ||| ||||||| ||| | ||
Sbjct 1280 TACCCTATGGATCTCGTGAAGACTCGGTTACAGACTTGTGTCAGTGAAGGTGGAAAGGCA 1339
Query 1018 CCAAAGCTGTGGAAACTCACGAAGGATATTTGGATTCAAGAAGGACCCCGAGCTTTTTAC 1077
|| ||| ||||||| || || || ||||| ||| ||| || ||||| || ||||| |||
Sbjct 1340 CCTAAGTTGTGGAAGCTTACAAAAGATATATGGGTTCGGGAGGGACCTCGGGCTTTCTAC 1399
Query 1078 AGGGGTCT-TTGTCCTTCTCTTATTGGGATTATACCTTACGCAGGAATTGACCTTGCTGC 1136
| |||||| || |||||||||| |||||||| | ||||| |||||||||||||| |||||
Sbjct 1400 AAGGGTCTGTT-TCCTTCTCTTCTTGGGATTGTTCCTTATGCAGGAATTGACCTCGCTGC 1458
Query 1137 TTACGAAACTCTTAAAGACTTATCAAGGTCACATTTTCTTCATGACACTGCCGAGCCAGG 1196
|| ||||| || |||||||| || || || || ||||||| ||||||| |||| ||
Sbjct 1459 ATATGAAACGCTAAAAGACTTGTCCAGAACATATATTCTTCAGGACACTG---AGCCGGG 1515
Query 1197 TCCTCTCATACAACTGGGATGTGGAATGACGTCTGGAGCTCTTGGAGCATCGTGTGTTTA 1256
|||||| ||||| ||| | ||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 1516 TCCTCTGATACAGCTGAGCTGTGGAATGACATCAGGAGCCCTTGGAGCATCATGTGTTTA 1575
Query 1257 CCCATTACAGGTCATTA-GAACAAGAATGCAAGCTGATA-TCTCAAAAACTAGCA-TGAT 1313
||| |||||||| | || |||||||||||||||| |||| | || || || | || |||
Sbjct 1576 CCCGTTACAGGT-AGTAAGAACAAGAATGCAAGCGGATAGT-TCGAAGACGA-CAATGAA 1632
Query 1314 CCAAGAGTTTCTGAAAACGCT-AAGAGGCGAAGGTCTAAGAGGTTTTTACAGAGGAATCT 1372
||||||||| |||| ||| | || ||| |||||||| |||||||| ||||||||| | |
Sbjct 1633 GCAAGAGTTTATGAATACGATGAA-AGGAGAAGGTCTTAGAGGTTTCTACAGAGGACTAT 1691
Query 1373 TCCCCAA-CTTCTTCAAAGTCA-TTCCTTCCGCAAGCATTTCGTACCTTGTCTACGAGGC 1430
| ||||| ||||| |||||| | |||| | |||||||| ||||| |||| || || ||
Sbjct 1692 TACCCAATCTTCT-CAAAGT-AGTTCCAGCGGCAAGCATCACGTACATTGTTTATGAAGC 1749
Query 1431 TATGAAGAAAAATCTGGCCCTTGATTa 1457
||||||||||||| |||| ||||||||
Sbjct 1750 TATGAAGAAAAATATGGCTCTTGATTA 1776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72991592430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5