BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950946
Length=992
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61830.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1552 0.0
> AT5G61830.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:24837157-24838970 FORWARD LENGTH=1219
Length=1219
Score = 1552 bits (840), Expect = 0.0
Identities = 938/987 (95%), Gaps = 0/987 (0%)
Strand=Plus/Plus
Query 1 GCGACGAGAGCGAAGAAGACGATGACGAACAAGGAGAAAGCGCGGGAGAGAAGGGAGAAA 60
|||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 66 GCGACGCGAGCGAAGAAGACGATGACGAACAAGGAGAAAGCTCGAGAGAGAAGGGAGAAA 125
Query 61 AGAATGCAGGAGATCTCTCTCCTTCGAACTATTCCTTACTCTGACCACCATAGGTGGTGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 AGAATGCAGGAGATCTCTCTCCTTCGAACTATTCCTTACTCTGACCACCATAGGTGGTGG 185
Query 121 TCTTCTGAAAATGTAGCAGTGGTGACCGGTTCAAACCGCGGGATTGGACTCGAGATTGCA 180
|||| ||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||
Sbjct 186 TCTTGTGAAAATGTAGCAGTAGTGACTGGTTCAAACCGCGGGATTGGATTCGAGATTGCA 245
Query 181 AGACAGCTTGCGGGTCACGGATTGACGGTTGTTCTTACAGCCAGAAACGTGGATGCTGGT 240
||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 246 AGACAGCTTGCGGTTCACGGATTGACGGTTGTTCTTACAGCTAGAAACGTGAATGCTGGT 305
Query 241 CTTGAAGCAGTTAAATCCTTGAGGCGCCAAGAAGAAGGTCTCAAGGTTGATTTTCATCAG 300
||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||
Sbjct 306 CTTGAAGCAGTTAAATCTTTGAGGCACCAAGAAGAAGGTCTCAAGGTTTATTTTCATCAA 365
Query 301 CTTGATGTCACGGACTCTTCTTCGATTAGAGAGTTTGGTTGCTGGATTAAGCAAACATTT 360
||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 366 CTTGATGTCACAGACTCTTCGTCGATTAGAGAGTTTGGTTGCTGGCTTAAGCAAACATTT 425
Query 361 GGAGGTTTAGATATTCTCGTGAACAATGCAGGTGTCAACTATAATCTCGGCTCAGATAAT 420
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 426 GGAGGTTTAGATATTCTCGTGAATAATGCAGGTGTTAACTACAATCTCGGCTCAGATAAT 485
Query 421 TCGGTTGAATTTGCCGAGACAGTTATCTCTACCAACTACCAAGGAACCAAAAACGTGACA 480
||||||||||||| || |||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 486 ACGGTTGAATTTGCTGAAACAGTTATATCTACTAACTACCAAGGAACCAAAAACATGACA 545
Query 481 AAAGCTATGATACCATTGATGAGACCATCTCCTCATGGCGCTCGTATTGTCAACGTTAGT 540
|||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 546 AAAGCTATGATACCCTTGATGAGACCATCTCCTCATGGCGCTCGTGTAGTCAATGTTAGT 605
Query 541 TCTCGGCTAGGTAGAGTAAATGGAAGACGTAATAGACTGGCAAATGTAGAGTTGAGAGAT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 TCTCGGCTAGGTAGAGTAAATGGAAGACGTAATAGACTGGCAAATGTAGAGTTGAGAGAT 665
Query 601 CAGCTAAGCAATCCGGATTTGCTGACTGAGGAACTTATAGACAGAACTGTTTCTAAATTC 660
|||||||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 666 CAGCTAAGCAGTCCAGATTTGCTGACCGAGGAACTTATAGACAGAACTGTCTCTAAATTC 725
Query 661 ATCAACCAAGTAAAAGACGGAAGTTGGGAATCAGGCGGGTGGCCTCAGACATTCACCGAC 720
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 726 ATCAACCAAGTAAAAGACGGAACTTGGGAATCAGGCGGGTGGCCTCAGACATTCACTGAC 785
Query 721 TACTCCATGTCTAAGCTTGCCGTCAATGCTTACACGAGACTAATGGCAAAAGAACTTTCG 780
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 786 TACTCCATGTCTAAGCTTGCAGTCAATGCTTACACGAGACTAATGGCAAAAGAACTTGAG 845
Query 781 AGAAGAGGAGAGGAAGAGAAGATTTATGTTAACAGCTTTTGTCCTGGTTGGGTGAAAACT 840
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 846 AGACGAGGAGAGGAAGAGAAGATTTATGTTAACAGCTTTTGCCCTGGTTGGGTGAAGACT 905
Query 841 GCTATGACTGGCTACGCCGGAAATATGCCACCTGAAGATGCAGCTGATACTGGAGTTTGG 900
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 GCGATGACTGGCTACGCCGGAAATATGCCACCTGAAGATGCAGCTGATACTGGAGTTTGG 965
Query 901 CTTAGCCTAGTTCTTTCCGAAGAGGCACTAACCGGAAAATTCTTTGCAGAGAGGCGTGAG 960
|||||||| || ||||||||||||||| |||||||||||||||| |||||||| ||||||
Sbjct 966 CTTAGCCTGGTCCTTTCCGAAGAGGCAGTAACCGGAAAATTCTTCGCAGAGAGACGTGAG 1025
Query 961 ATCAACTTCTGAGGGTTGTTGAAAGTT 987
||||||||||||||||||||||| |||
Sbjct 1026 ATCAACTTCTGAGGGTTGTTGAATGTT 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48576420149
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5