BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950950

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61880.1 | Symbols:  | Protein Transporter, Pam16 | chr5:248...   534    2e-151


> AT5G61880.1 | Symbols:  | Protein Transporter, Pam16 | chr5:24850257-24851776 
FORWARD LENGTH=826
Length=826

 Score =  534 bits (289),  Expect = 2e-151
 Identities = 349/378 (92%), Gaps = 4/378 (1%)
 Strand=Plus/Plus

Query  1    GGTCTGATTATTCTCTGACGATGGCTGCAAGAGTTTTGGCAAGTTTGTTTGTGATGACCT  60
            ||||||| || |||||||| |||||||||||||||||||||||| || ||||||||  ||
Sbjct  201  GGTCTGAGTAATCTCTGACAATGGCTGCAAGAGTTTTGGCAAGTGTGATTGTGATGGGCT  260

Query  61   CTGGAATCATAGCCAGGGCTTGTACTCAGGCATATCGTCAGGCGCTTGCAAATGCATCTA  120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  261  CTGGAATCATAGCCAGGGCTTGTACTCAGGCATATCGTCAGGCGCTTGCAAATGCATCAA  320

Query  121  AAACCGGGGTTGTGCATGAAGC-AGCGCAGAATATTAAGAGAGGGTTGA-TAATAAGTGA  178
            |||||||||||| ||||||||| | | |||| ||||||||||||||||| || || ||||
Sbjct  321  AAACCGGGGTTGCGCATGAAGCGA-CACAGACTATTAAGAGAGGGTTGACTA-TAGGTGA  378

Query  179  ACCAGAAGCTAGACAGATTCTTGGTGTAACTGAGAAATCATCTTGGGACGAGGTTCTTAA  238
            | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  379  AGCAGAAGCTAGACAGATTCTTGGTGTAACTGAGAAATCATCTTGGGACGAGATTCTTAA  438

Query  239  GAAATACGACACGTTGTTCCAACGCAATGCGCAGAACGGAAGCTTTTATCTCCAATCAAA  298
            ||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| ||
Sbjct  439  GAAATACGACACGTTGTTCGAACGCAATGCGCAGAATGGAAGCTTCTATCTCCAATCTAA  498

Query  299  GGTCCATAGAGCTAAGGAATGCTTAGAGGCTGCATACCAGAAGAATTCAACAAGAAGCGT  358
            |||||||||||||||||||||||||||| ||||||||||||||| | |||||| ||||| 
Sbjct  499  GGTCCATAGAGCTAAGGAATGCTTAGAGACTGCATACCAGAAGAGTACAACAACAAGCGC  558

Query  359  ATGAATAAGCAATGAAAC  376
            ||||| ||||||| ||||
Sbjct  559  ATGAACAAGCAATAAAAC  576



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17995854142


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5