BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950951
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61890.1 | Symbols: | Integrase-type DNA-binding superfamil... 1027 0.0
AT5G07310.1 | Symbols: | Integrase-type DNA-binding superfamil... 311 7e-84
> AT5G61890.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:24852639-24853910 REVERSE LENGTH=913
Length=913
Score = 1027 bits (556), Expect = 0.0
Identities = 697/763 (91%), Gaps = 18/763 (2%)
Strand=Plus/Plus
Query 1 AGCAAAAGAGTGGATCCTCGAATGTATGGGAAGGGGCCTTTTGGAGGCGATGAATCTGAG 60
||| ||| ||| |||||||| |||||||||||| ||||||||||||| |||||||||||
Sbjct 148 AGC-AAA-AGTAGATCCTCGGATGTATGGGAAGAGGCCTTTTGGAGGTGATGAATCTGAA 205
Query 61 GAAAAAGAAGAAGATGAGAACCTT-TTCCCGGTCTTCTCCGCCCGATCTCAACACGACAT 119
|||| |||||||||||||| ||| |||||||||||||| ||||||||||||||||||||
Sbjct 206 GAAAGGGAAGAAGATGAGAA-CTTGTTCCCGGTCTTCTCGGCCCGATCTCAACACGACAT 264
Query 120 GCGTGTTATGGTCTCGGCCTTGACTCAAGTAATCGG---------AAGCAACTCTCATGA 170
|||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 265 GCGTGTTATGGTCTCGGCCTTGACTCAAGTAATCGGAAACCAACAAAGCAAATCTCATGA 324
Query 171 CAACATGAGCTCTA-T--TGATAATTATCCTTCTGTGTATAATCCACAAGACCCTAATCA 227
||||| ||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 325 TAACATCAGCTCTATTGATGATAACTATCCTTCTGTGTATAATCCACAAGACCCTAATCA 384
Query 228 ACAAGTTGCTCCTACTCATCAAGACCAAGGGAACTTGAGGAGGAGACACTATAGAGGTGT 287
||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 385 ACAAGTTGCGCCTACTCATCAAGACCAAGGGGACTTGAGGAGGAGACATTATAGAGGTGT 444
Query 288 AAGGCAAAGGCCATGGGGAAAGTGGGCAGCTGAAATCCGAGATCCACAAAAGGCGGCACG 347
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 445 AAGGCAAAGGCCATGGGGAAAGTGGGCAGCTGAAATCCGAGACCCAAAAAAGGCGGCACG 504
Query 348 AGTGTGGCTCGGGACATTTGAAACCGCTGAATCCGCAGCCTTAGCTTATGATGAAGCAGC 407
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 505 TGTGTGGCTCGGGACATTTGAAACCGCTGAATCTGCGGCCTTAGCTTATGATGAAGCAGC 564
Query 408 TCTTAAGTTCAAAGGAAGCAAAGCAAAACTCAATTTTCCCG-AGAGGGTTCAGCTTGGAA 466
|| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 565 CCTAAAGTTCAAAGGAAGCAAAGCAAAACTCAATTT-CCCGGAGAGGGTTCAGCTTGGAA 623
Query 467 GTAACTCTACATATTACGCCTCCAACCAAATTCCACAAATCGAGCCACAAAATATACCAA 526
||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||| |
Sbjct 624 GTAACTCTACATATTACTCCTCCAACCAAATTCCACAAATGGAACCACAAAGTATACCGA 683
Query 527 ACTATAATCAATATTTTCAAGATGGGAGTAGTAATGATATGCTAAGTTTTAATTTGGGCG 586
||||||||||||| | ||| |||| ||||||| ||||||||||||||||||||||||||
Sbjct 684 ACTATAATCAATACTATCATGATGCGAGTAGTGGTGATATGCTAAGTTTTAATTTGGGCG 743
Query 587 GTTTATATGGTAGTGGTAGTGGATATTCCATGTCCCATGATCATAGTACTACGACTGCTG 646
|| ||||| ||||||| |||||||| ||||| |||||| ||||||||||||||||||
Sbjct 744 GTGGGTATGGGAGTGGTACCGGATATTCAATGTCTCATGATAATAGTACTACGACTGCTG 803
Query 647 CTACAACTTCCTCGTCTTCTGGTGGCTCTTCTAGGCAACATGAAGATCAAGATTATGCCA 706
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 804 CTACAACTTCTTCGTCTTCTGGTGGCTCTTCTAGGCAACAAGAAGAGCAAGATTATGCCA 863
Query 707 AATTTTGGCGCTTTGGGGATTCATCTTCCTCTCCTCATTCGGG 749
||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 864 GATTCTGGCGCTTTGGGGATTCTTCTTCCTCTCCTCATTCGGG 906
> AT5G07310.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:2305684-2306660 FORWARD LENGTH=792
Length=792
Score = 311 bits (168), Expect = 7e-84
Identities = 380/476 (80%), Gaps = 40/476 (8%)
Strand=Plus/Plus
Query 21 AATGTATGGGAAGGGGCCTTTTGGAGGCGATGAATCTGA-G-GAA-AAAGAA---GA--A 72
||| ||||| ||| |||| ||| ||||||||||||| || | || |||||| || |
Sbjct 16 AAT-TATGGAAAGAGGCCCTTTCGAGGCGATGAATCGGATGAAAAGAAAGAAGCCGATGA 74
Query 73 -GATGAGAACCTTTTCCCGGTCTTCTCCGCCCGATCTCAACACGACATGCGTGTTATGGT 131
||||||||| | ||||| ||||||| |||||||| ||| | |||||||||| |||||
Sbjct 75 TGATGAGAACATATTCCCTTTCTTCTCTGCCCGATCCCAATATGACATGCGTGCCATGGT 134
Query 132 CTCGGCCTTGACTCAAGTAATCGG------AAGCAACTCTCATGACAACATGAGCTCTAT 185
||| |||||||||||||| || || ||||| ||||||||| | || | | | |
Sbjct 135 CTCAGCCTTGACTCAAGTCATTGGAAACCAAAGCAGCTCTCATGA-TA-AT-AAC-C-A- 188
Query 186 TGATAATTATCCT-TCTGTGTATAATCCACAAGACCCTAATCAACAAGTTGCTCCTACTC 244
| || | ||| | ||||||||||| |||||| ||||| | || | |||||| | |
Sbjct 189 --A-CATCAACCTGT-TGTGTATAATCAACAAGATCCTAACCCAC-CG--GCTCCT-C-C 239
Query 245 -A-TCAAGACCAAGGG-AACTTGAGGAGGAGACACTATAGAGGTGTAAGGCAAAGGCCAT 301
| |||||| |||||| | ||||||| ||| ||||||||||| ||||| ||| | ||||
Sbjct 240 AACTCAAGATCAAGGGCTA-TTGAGGAAGAGGCACTATAGAGGGGTAAGACAACGACCAT 298
Query 302 GGGGAAAGTGGGCAGCTGAAATCCGAGATCCACAAAAGGCGGCACGAGTGTGGCTCGGGA 361
|||||||||||||||||||||| || ||||| |||||||| ||||| |||||||||||||
Sbjct 299 GGGGAAAGTGGGCAGCTGAAATTCGGGATCCGCAAAAGGCAGCACGGGTGTGGCTCGGGA 358
Query 362 CATTTGAAACCGCTGAATCCGCAGCCTTAGCTTATGATGAA-GCAGCTCTTAAGTTCAAA 420
||||||| || |||||| | || || |||||||||||| || ||||||||||||||||||
Sbjct 359 CATTTGAGACTGCTGAAGCTGCGGCTTTAGCTTATGAT-AACGCAGCTCTTAAGTTCAAA 417
Query 421 GGAAGCAAAGCAAAACTCAATTTTCCC-GAGAGGGTTCAGCTTGGAAGTAACTCTA 475
||||||||||| ||||||||||| ||| ||||| | ||| || | ||||||| |||
Sbjct 418 GGAAGCAAAGCCAAACTCAATTT-CCCTGAGAGAGCTCAACTAGCAAGTAACACTA 472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37725844397
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5