BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950964
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62020.1 | Symbols: AT-HSFB2A, HSFB2A | heat shock transcrip... 1182 0.0
> AT5G62020.1 | Symbols: AT-HSFB2A, HSFB2A | heat shock transcription
factor B2A | chr5:24916089-24917643 FORWARD LENGTH=1472
Length=1472
Score = 1182 bits (640), Expect = 0.0
Identities = 860/958 (90%), Gaps = 48/958 (5%)
Strand=Plus/Plus
Query 4 CTTACGATTAAAATTCTATGACTTCGCCGCCGGTGGACGCAATGGTTACCGGAGAATCAT 63
|||||| ||||||| |||||| |||||||||||| ||||||||| |||||||||||||||
Sbjct 107 CTTACGCTTAAAATCCTATGAATTCGCCGCCGGTTGACGCAATGATTACCGGAGAATCAT 166
Query 64 CATCTCAAAGATCTATCCCGACGCCGTTTCTCACAAAAACGTATAACCTCGTTGAAGATA 123
| || |||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 167 CGTCACAAAGATCTATCCCAACGCCGTTTCTCACAAAAACGTTTAACCTCGTTGAAGATA 226
Query 124 GTTCCATCGACGATGTTATCTCATGGAACGAAGATGGTTCTTCTTTCATCGTATGGAATC 183
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 227 GTTCCATCGACGATGTTATCTCATGGAACGAAGATGGTTCCTCTTTCATCGTATGGAATC 286
Query 184 CAACAGATTTCGCTAAAGATTTGCTTCCTAAACACTTCAAACACAACAATTTCTCTAGCT 243
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 287 CGACAGATTTCGCTAAAGATTTGCTTCCTAAACACTTCAAACACAACAATTTCTCTAGTT 346
Query 244 TCGTTCGTCAGCTCAACACTTACGGATTCAAAAAAGTAGTACCGGATCGATGGGAGTTTT 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 347 TCGTTCGTCAGCTCAACACTTACGGATTCAAAAAAGTTGTACCGGATCGATGGGAGTTTT 406
Query 304 CGAATGATTTCTTCAAGAGAGGAGAGAAACGGCTTCTCCGTGAGATCCAACGTCGGAAAA 363
| || |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 407 CAAACGATTTCTTTAAGAGAGGAGAAAAACGTCTTCTCCGTGAGATCCAACGTCGGAAAA 466
Query 364 TAACAACGACGCATCAAACAGTTGTTGCTCCGTCGTCGGAACAGA-GAATCCAGACGATG 422
||||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||
Sbjct 467 TAACAACGACGCATCAAACAGTTGTTGCTCCTTCGTCGGAACA-ACGAAACCAGACGATG 525
Query 423 GTTGTATCACCGTCAAATTCAGGGGAGGataataataacaataataatatgaataatCAG 482
|||||||||||||||||||| ||||| ||||||||||| |||| | ||| | ||
Sbjct 526 GTTGTATCACCGTCAAATTCCGGGGAAGATAATAATAA---TAATCAGGTGA-TG-TC-- 578
Query 483 GTGATGTCTTCTCCGTCGTCGTGGTACTGTCA--AA-CGA---CG---GGGAATGGTGGT 533
| | | ||||||||||||||||| ||||| || ||| || ||||||||||||
Sbjct 579 -T--T--CGTCTCCGTCGTCGTGGTATTGTCATCAAACGAAGACGACTGGGAATGGTGGT 633
Query 534 TTATCAGTTGAGTTATTGGAAGAGAACGAGAAGCTTCGGAGTCAAAACATTCAGCTTAAC 593
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 634 TTATCAGTGGAGTTATTGGAAGAGAACGAGAAGCTTCGGAGTCAAAACATTCAGCTAAAC 693
Query 594 CGTGAGCTTACTCAGATGAAATCTATCTGCGATAATATCTTTAGTCTCATGTCGAATTAC 653
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 694 CGTGAGCTTACTCAGATGAAATCTATCTGCGATAATATCTATAGTCTCATGTCGAATTAC 753
Query 654 GTCGGATCTCAGGCCACTGATCAGAGTTATTCTCCGGGAGGCAGTAGCAGTCAACCGGTG 713
|||||||||||| ||||||||| |||||||||||| ||||| ||||| ||||||||| ||
Sbjct 754 GTCGGATCTCAGCCCACTGATCGGAGTTATTCTCCCGGAGGTAGTAGTAGTCAACCGATG 813
Query 714 GAGTTTTTACCGGTGAAGCGGTTTTCAGAGATGGAGGTTGA-G--GAAGAAG---CGAGT 767
||||||||||||| |||||||||||| ||||||||| |||| | ||||||| |||||
Sbjct 814 GAGTTTTTACCGGCGAAGCGGTTTTCGGAGATGGAGATTGAAGAAGAAGAAGAAGCGAGT 873
Query 768 CCGAGGCTGTTTGGTGTTCCGATAGG-TCTAAAACGGACGAGAAGTGAAGGAGTTCAGGT 826
|||||| |||||||||||||||| || | |||||||||||||||||||||| ||||||||
Sbjct 874 CCGAGGTTGTTTGGTGTTCCGATTGGGT-TAAAACGGACGAGAAGTGAAGGTGTTCAGGT 932
Query 827 GAAGACGGTTTCTACGGCGGCGGTGGTGGGAGAAAATTCCGATGAGT-G--GT--TGAC- 880
||||||| ||||||| ||| |||| ||||||||||||||| | | ||
Sbjct 933 GAAGACG------ACGGCGGTGGT--TGGG-GAAAATTCCGATGAGGAGACGCCGTGGTT 983
Query 881 GAGACATTGTAATCGAACCAATCAGAGAGTTTGTAATTAAA--CGAACGGCTTAGATT 936
|||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 984 GAGACATTATAATCGAACCAATCAGAGAGTTTGTAATTAAAAACGAACGGTTTAGATT 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5