BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950971

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G62065.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   510    3e-144


> AT5G62065.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr5:24929207-24929647 
FORWARD LENGTH=363
Length=363

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 335/364 (92%), Gaps = 2/364 (1%)
 Strand=Plus/Plus

Query  23   ATGACGAGACCATTCTCTCCGGTGGTGTTTTTCTTCTTACTACTACTGCCGGCGATATGT  82
            ||||||||| |||||||||||||||||| | |||||||| |||||||||   ||||||||
Sbjct  1    ATGACGAGATCATTCTCTCCGGTGGTGTCTCTCTTCTTATTACTACTGCAAACGATATGT  60

Query  83   TCAGCCACCGTAGAAAACGCGGCCGACTGTGCGGCAGTAGGAACGCTGATATCCTCGTGC  142
            |||||||| || |||||||| || || |||||||| || |||||||||||||| ||||||
Sbjct  61   TCAGCCACTGTGGAAAACGCAGCGGATTGTGCGGCGGTGGGAACGCTGATATCGTCGTGC  120

Query  143  ACGGAGTTTGTGAATTACGGGTACCCGGATCCGATACCCGGGTC-ACGTTGCTGCGACGC  201
            || ||||||||||| |||||||| |||||||||||||| ||||| | |||||||||||||
Sbjct  121  ACAGAGTTTGTGAACTACGGGTATCCGGATCCGATACCAGGGTCGA-GTTGCTGCGACGC  179

Query  202  GATGACCGTAATCGGAACGTACTCTGATTCGTTGGAGAAGAGAAAGTGGCTCTGTAACTG  261
            |||||| || |||||||| ||||||||||||| |||||||||||||||||| ||||||||
Sbjct  180  GATGACTGTGATCGGAACTTACTCTGATTCGTCGGAGAAGAGAAAGTGGCTGTGTAACTG  239

Query  262  CTTCATGGATCTCATCAATGTCTATAACCCTAACGCCACCGCCATTTCTACTTTGTCTGG  321
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  240  CTTCATGGATCTCATCAATGTCTATAACTCTAACGCCACCGCCATTTCTACTTTGTCTGG  299

Query  322  CTTCTGCGGCGTCGTTTTGGGCTTCACCATCGATCCTAACACCGATTGCAACTTCATTCA  381
            ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct  300  CTTCTGCGGCGTCGTTTTGGGCTTCACCATCGACCCTAACACCGACTGCAACTTCATTCA  359

Query  382  ATGA  385
            ||||
Sbjct  360  ATGA  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5