BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950977
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62130.2 | Symbols: | Per1-like family protein | chr5:24950... 1563 0.0
> AT5G62130.2 | Symbols: | Per1-like family protein | chr5:24950264-24953232
REVERSE LENGTH=2039
Length=2039
Score = 1563 bits (846), Expect = 0.0
Identities = 922/959 (96%), Gaps = 4/959 (0%)
Strand=Plus/Plus
Query 120 GTCATGTGTTGATCAATGTCAGAAAACTGGATGCGTGGGGGATACTTGCTTCCAACACTG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 GTCATGTGTTGATCAATGTCAGAAAACTGGATGCGTGGGGGATACTTGCTTCCAACACTG 744
Query 180 TAAATTTTCAGCTGATGGAAAAGCCATTGACGGTCCGTGGTACATGCAAGAGCCACTTTA 239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 745 TAAATTTTCAGCTGATGGAAAAGCCATTGACGGTCCATGGTACATGCAAGAGCCACTTTA 804
Query 240 CCTAAGATGGAAACAATGGGATTGCCAAAGTGACTGTGAGTACGAATGCATGATGACaag 299
||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 805 CCTGAGATGGAAACAATGGGATTGCCAAAGTGATTGTCAGTACGAATGCATGATGACAAG 864
Query 300 agaagaagaaagaaaaaggaacggagaaagaCCTACCAAGTATTTCGGTAAATGGCCACT 359
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 865 AGAAGAAGAAAGAAAAAGAAACGGAGAGAGACCTACCAAGTATTTCGGTAAATGGCCACT 924
Query 360 CAAACATGTCTACGGAATTCAGGAACCTGTGTCTGTTGCTTTCTCTGCTCTCGACCTTGC 419
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 925 CAAACATGTCTACGGAATTCAGGAACCTGTCTCTGTTGCTTTCTCTGCTCTGGATCTTGC 984
Query 420 GATGCAATTCCAAGGATGGGTCTCATATTTCATCCTCGTTTACTATAAATTGCCTCTCCA 479
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 AATGCAGTTTCAAGGATGGGTCTCATATTTCATCCTCGTTTACTATAAATTGCCTCTCCA 1044
Query 480 GCCAAATCGGAAAACGTACTACGAGTACAACGGATTAGTGCATATCTATGCCATCATCGT 539
|||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| ||
Sbjct 1045 GCCAAATCGGAAAACGTACTACGAGTACAATGGAATAGTGCATATCTACGCCATCATTGT 1104
Query 540 AATGAATTCACTCTTCTGGAGTAGTATTTGTCATACCAGAGATGTTGAATTGACGGTGAG 599
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1105 AATGAATTCACTCTTCTGGAGTAGTATTTGTCATAGCAGAGATGTTGAATTGACGGAGAG 1164
Query 600 GCTAGATTACTCTTCAGCTACTGTATTAGCCGGATTTTCGCTTATTCTAGCAATACTTCG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1165 GCTAGATTACTCTTCAGCTACTGTATTAGCCGGATTTTCGCTTATTCTAGCAATACTCCG 1224
Query 660 GTCTTTCAGTATTCAAGATCAATCTGTCAAAATCATGGTTACTGCACCTATTCTTGCGGT 719
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 GTCCTTCAGTATTCAAGATCAATCTGTCAAAATCATGGTTACTGCACCTATTCTTGCGGT 1284
Query 720 TGTTGCAACTCATATTCTCTACCTAAATTTCTACAACCTCGATGAAGGGCTTCACTGGAA 779
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1285 TGTTGCAACTCATATTCTCTACCTTAATTTCTACAACCTCGATGAAGGGCTTCACTGGAA 1344
Query 780 AGTTATGTTCGGGATTGGAGGAATAGAGCTAGTAGTGTGGGGATTATGGGCGGCTTTAAC 839
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1345 AGTTATATTCGGGATTGGAGGAATAGAGCTAGTAGTATGGGGATTATGGGCGGCTTTAAC 1404
Query 840 GTCTCATCCATCGAAGTGGAAGCTAAGAGCTTTCTTCATCTCGGGCATACTCACATTATG 899
||| |||||||| ||||||||||||||||||||||| |||||| ||||||||||||| ||
Sbjct 1405 GTCACATCCATCAAAGTGGAAGCTAAGAGCTTTCTTGATCTCGAGCATACTCACATTGTG 1464
Query 900 TCTTAGAATGCTCGATTTCCCTCCATACAAAGGCTACGTCGATGCTCATGCTCTTTGGCG 959
|||||||||| |||| |||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1465 TCTTAGAATGTTCGACTTCCCTCCGTACAAAGGCTACATCGATGCTCATGCTCTTTGGCG 1524
Query 960 CGGCGCAGGGATTCCTCTTTCTTACCTTTGGTGGAGTTTCGTCTGCGATGACGCAGTTTT 1019
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 CGGTGCAGGGATTCCTCTTTCTTACCTTTGGTGGAGTTTCGTCTGCGATGACGCAGTTTT 1584
Query 1020 CAGAACCACCGTTAATCTCAAGAAATCCAAGTGAT---GAA-AAATGATACAAAAGTCT 1074
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1585 CAGAACCACCGTTAATCTCAAGAAATCCAAGTGATCATGAACAAATGATACAAAAGTCT 1643
Score = 169 bits (91), Expect = 6e-41
Identities = 105/112 (94%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 7 GTTTTTGGTAATCGGATGGCGCGAAATCCGCCATGGGTTCTGCTTATTGTTGTGGTCTGG 66
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | |
Sbjct 300 GTTTTTGGTAATCGGATGGCGCGAAATCTGCCATGGGTTCTGCTTATTATTGTGGTATCG 359
Query 67 TGTCTTGTTTCAACGCTTGAAGCTAGTGATGGAGATTCTGATCCTCTTTACA 118
|||||||||||||| |||||||||||||| |||||||||||| |||||||||
Sbjct 360 TGTCTTGTTTCAACACTTGAAGCTAGTGAAGGAGATTCTGATTCTCTTTACA 411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5