BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950979

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G62150.1 | Symbols:  | peptidoglycan-binding LysM domain-con...   569    5e-162


> AT5G62150.1 | Symbols:  | peptidoglycan-binding LysM domain-containing 
protein | chr5:24958241-24958769 FORWARD LENGTH=529
Length=529

 Score =  569 bits (308),  Expect = 5e-162
 Identities = 335/348 (96%), Gaps = 1/348 (0%)
 Strand=Plus/Plus

Query  2    TTTTTATAAATTAAAAGGCATGAGAGGTTCAAGAACAGGTTCTTCAGACATGAGTGCTTG  61
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  67   TTTTTATAAATT-AAAGGCATGAGAGGTTCAAGAACAGGTTCTTCAGACATGAGTGCTTG  125

Query  62   GTGTTCTGCTGTTGTGTTGTTGTCTTTAATACTTTTGTTATCCGTTCGTGAAAACAACGC  121
            |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct  126  GTGTTCTGCTGTTGTGTTATTGTCTTTAATACTTTTGTTATCTGTTCGTGAAAACAACGC  185

Query  122  TTCTAATTCGATTAGAGGGTCTCAATTCTCAACGAAACCTTGTGAGGAGATTTACGTCGT  181
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct  186  TTCTAATTCGATTAGAGGTTCTCAATTCTCAACGAAACCTTGTGAGGAGATTTACATCGT  245

Query  182  CGGAGAAGGAGAGACACTTCACACCATCGGCGATAAGTGCGGCGACCCATTTATCGTGGA  241
            |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct  246  CGGAGAAGGAGAGACACTTCACACCATCGGCGATAAATGCGGCGACCCGTTTATCGTGGA  305

Query  242  GCGAAACCCGCATATCCATGATCCGGATGATGTCTTTCCAGGTCTTGTTCTCAAGATTGC  301
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct  306  GCGAAACCCGCATATCCATGATCCCGATGATGTCTTTCCAGGTCTTGTTCTCAAGATCGC  365

Query  302  ACCTTTTTACTTCTCCAGAAAATTGTAAGACATATAACAAAAACGTTT  349
            |||||||||||||  ||| |||||||||||||||||||||| ||||||
Sbjct  366  ACCTTTTTACTTCAACAGGAAATTGTAAGACATATAACAAATACGTTT  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16337018425


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5