BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950981

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G77500.1 | Symbols:  | Protein of unknown function (DUF630 a...   185    2e-46


> AT1G77500.1 | Symbols:  | Protein of unknown function (DUF630 
and DUF632) | chr1:29121489-29125191 FORWARD LENGTH=3158
Length=3158

 Score =  185 bits (100),  Expect = 2e-46
 Identities = 114/121 (94%), Gaps = 0/121 (0%)
 Strand=Plus/Plus

Query  130   GGATCATGTATCTAGTAGCACCATCTACACGGTCATCGCACTCTCGGCCCAGACTATCAA  189
             ||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct  1751  GGATCATGTATCTGGTAGCACCATCCACACGGTCATCGCACTCTCAGCCCAGACTATCAA  1810

Query  190   TACGTTTAACATCTAGGACACGGAAAATGGCGAAAGCATACAATGGACAAGATGTTAATG  249
             |||||||||||||||| || || |||||||||||| ||||||||||||||||||||||||
Sbjct  1811  TACGTTTAACATCTAGAACTCGAAAAATGGCGAAATCATACAATGGACAAGATGTTAATG  1870

Query  250   G  250
             |
Sbjct  1871  G  1871



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12868543744


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5