BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950983
Length=2167
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62170.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2990 0.0
> AT5G62170.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G51850.1);
Has 381 Blast hits to 359 proteins in 81 species: Archae -
0; Bacteria - 16; Metazoa - 101; Fungi - 21; Plants - 99; Viruses
- 3; Other Eukaryotes - 141 (source: NCBI BLink). | chr5:24972977-24975549
REVERSE LENGTH=2324
Length=2324
Score = 2990 bits (1619), Expect = 0.0
Identities = 2026/2206 (92%), Gaps = 93/2206 (4%)
Strand=Plus/Plus
Query 1 AAAACTTGACTAAACAAAAAATGGGAAGAGACTGGTCCTGGCTCGGCGGAGGCGGCGGAG 60
|||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 55 AAAACTTGACAAAACAAAAAATGGGAAGAGACTGGTCCTGGCT---------CGGCGGAG 105
Query 61 GGAAGAAGAAATCCTCAAGCAAGTCAAAGAAAGAAGACATTAAA-CCAC-C-GCCGTCGC 117
||||||||||||||||||||||||||||| |||||||||| ||| |||| | |||| | |
Sbjct 106 GGAAGAAGAAATCCTCAAGCAAGTCAAAGGAAGAAGACATCAAACCCACGCAGCCGCCAC 165
Query 118 CGCCATCTTTCGCCGGAAATACTGCAACGGCGGCGGGATGCATGAGTGCTGTGTTCAACA 177
|||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 166 CGCCGTCACTCGCCGGAAATACTGCAACGGCGGCGGGATGCATGAGTGCTGTCTTCAACA 225
Query 178 TTTTCGATTTTCAACACTTACAGTTTCCTATTAACCACCACCATCTTCATCTTCCCAAAG 237
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 TTTTTGATTTTCAACATTTACAGTTTCCTATTAACCACCACCATCTTCATCTTCCCAAAG 285
Query 238 GAGTAGATGCACCGAGAAACAGCTTGGAATCAACGGAGGAGACAGAGGAGGAAACTCCAT 297
| ||||||||||| |||||||||||||||||||| | |||||||||||| |||
Sbjct 286 GCGTAGATGCACCAAGAAACAGCTTGGAATCAAC------G---GAGGAGGAAACTTCAT 336
Query 298 TTTCACCAACCAGAAAAGATGGAAATTTAAATATCTCTATGGGTATTAAAATCAAGACCA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 TTTCACCAACCAGAAAAGATGGAAATTTAAATATCTCTATGGGTATTAAAATCAAGACCA 396
Query 358 AACAACAAGCAAGATCATCATCAGCATCTCTTACACCCACTGAAACTTATTCTCCGAGCA 417
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 397 AACCACAAGCAAGATCATCATCAGCATCTCTTACACCCACTGAAACTTACTCTCCGAGCA 456
Query 418 TAAAGACACCAACTTTGGTTGCTAGACTCATGGGTCTTGATCTTGTTCCTGATAATTACA 477
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 TAAAGACACCTACTTTGGTTGCTAGACTCATGGGTCTTGATCTTGTTCCTGATAATTACA 516
Query 478 GATCATCTCCTACTCCATCTTCTTCATCTTCTTCTACCTTAATTGATCTCAAGACGCCAA 537
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 517 GATCATCTCCTACTCCATCTTCGTCATCTTCTTCTACCTTAATTGATCTCAAGACACCAA 576
Query 538 CAAGATCTTCTCACGCCAACAAACACAGACATTACTCTCTCCAAAGAAACTCTATCGACG 597
|||||||||||||||| || |||||||||||||| |||||||||||||||||| ||||||
Sbjct 577 CAAGATCTTCTCACGCAAAGAAACACAGACATTATTCTCTCCAAAGAAACTCTGTCGACG 636
Query 598 GAGGTACACGTTCTCTTCCCGAAACACCGAGGATTTCACTCGGAAGGAGATCCGTTGACG 657
|||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 637 GAGGCACACGTTCTCTTCCCGAGACACCGAGGATTTCACTTGGAAGGAGATCCGTTGATG 696
Query 658 TCAACTGTTACGAACACCAACGTTCTTCACTTCATCTCAGAGACAACAACAACAACAGCA 717
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 697 TCAACTGTTACGAACACCAACGTTCTTCACTTCATCTCAGAG------ACAACAACATCA 750
Query 718 ACGTGTTTCCCGAAAGAGAGGCTGGTATTAACAATGTCAGGCTCACAAGGGTCAAAGAGA 777
|||||||||| |||||||| ||||||||||||||||||||||||| |||||| | | |
Sbjct 751 ACGTGTTTCCTGAAAGAGAATCTGGTATTAACAATGTCAGGCTCACGAGGGTC--A-A-A 806
Query 778 TGAAGATACATGAAGATAAAGAGAATCGGAGTCCACGAGAGTACGCTAGACAGATAGTAA 837
| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 807 -G-AGATACACGAAGATAAAGAGAATCGGAGTCCACGAGAGTATGCTAGACAGATAGTGA 864
Query 838 TGCAGTTGAAGGAGAACGTTAGCCGAAGAAGAAGAATGGGAACTGATATAACCAACAAAG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 TGCAGTTGAAGGAGAACGTTAGCCGAAGAAGAAGAATGGGAACTGATATAACCAACAAAG 924
Query 898 -AACAACAATCAAGAGAGATTCATGAGTCCAAGAAAGCTTCTTCTAAGATTACAACAATC 956
||| |||| |||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 925 AAAC-ACAACCAAGAGAGGTTCATGAGTCCAAGAAAGCTTCTTCTAAG---ACCACAATC 980
Query 957 ATCACTCATGAT-TCCTCATCATCCCCGAGATTAGGATTAACAGAAATCCCCAAAACCAA 1015
|||||||||||| | ||||||||||||||||| |||||||| ||| |||||||||| ||
Sbjct 981 ATCACTCATGATGT-ATCATCATCCCCGAGATTGGGATTAACGGAAGTCCCCAAAACAAA 1039
Query 1016 ACCAAACTCACCTCAGACAAATAATGTTGCTACCAAGATTCTGGAGAA-AACAACAGTGA 1074
||||| ||||| ||||||||||||||| ||| ||||||||||||| || |||| || |||
Sbjct 1040 ACCAACCTCACTTCAGACAAATAATGTCGCTTCCAAGATTCTGGA-AACAACAGCAATGA 1098
Query 1075 AGGTTCAAGACAAGACCAGATTATCAACAGCGCAAGAAGAGCCACAGGGAGAACAAGGAC 1134
||||||||||||||||||| ||| |||||| ||| |||||| | | ||||||
Sbjct 1099 AGGTTCAAGACAAGACCAGGTTACCAACAGTGCATGAAGAG-C-C-------ACAAGG-- 1147
Query 1135 AACAAGTGAAAGAAAAACAGAGGAAGTCTACAAAGAAATGCAAGAAACCAGAGAATTTCA 1194
||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1148 AAC-AGAGAAAGAAAAACAGAGGAAATCTACAAAGAAATGCAAGAAACCAGAGAATTTCA 1206
Query 1195 AGTCGAGATTAGTGAAGCCGCCACAGA-CAATGCAAGAAGAGCCGTTTGTTCGATCA-C- 1251
||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |
Sbjct 1207 AGTCGAGATTAGTGAAGCCGCCACA-ATCAATGCAGGAAGAGCCGTTTGTTCGATCACCA 1265
Query 1252 -C-ATTAACAAGTAACAACAAGAACAACAATGGTC-T-T-CTTCTTATTCAAGGAGACAA 1306
| || ||||| | |||||| ||||||||||||| | | |||||||| |||||||||||
Sbjct 1266 GCAATAAACAA-CAGCAACAACAACAACAATGGTCATCTACTTCTTATCCAAGGAGACAA 1324
Query 1307 ATCTT-CATGCAAGAAAACTCCTTTATCCATTAATCATCTCATCAACTTCACTAGTGTTC 1365
||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1325 ATCTTCCA-GCAAGAAAACTCCTTTATCCATTAATCATCTCATCAACTTCACCAGTGTTC 1383
Query 1366 CCACCATCAAGAAGAAAGATTCATC-ACTTCATCACAAATCGTCAAACTTAAAGCTCAGA 1424
||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||
Sbjct 1384 CCACCATCAAGAAGAAAGATTCA-CAACCTCATCACAAATCGTCAAACTTAAAGCTCAGA 1442
Query 1425 GAAACACAAACACCAAGAAACAGAG---CATCATCAGAGATTCCTAGTTTCCCGAG---- 1477
||||||||||||||||||||||||| ||||||||||| | |||||||| |||||
Sbjct 1443 GAAACACAAACACCAAGAAACAGAGCATCATCATCAGAGCTCCCTAGTTTTCCGAGCCAA 1502
Query 1478 ---------C-C----CACCAATCGCCGGCGGCGAGTTAGAGTACATAACAAGAACCCTA 1523
| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1503 TCACAACACCACATTGCACCAATCGCCGGCGGCGAATTAGAGTACATAACAAGAACCCTA 1562
Query 1524 AGACGAACAGGAATCGACAGAGACACACCAATCTCATACGCTAAATGGTTCTCTCCTTCA 1583
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 AGAAGAACAGGAATCGACAGAGACACACCAATCTCATACGCTAAATGGTTCTCTCCTTCA 1622
Query 1584 CACCCACTCGATCCATCAATCTTCTACTTCCTCGAACATTTCGCTGTTACATCAACCAGA 1643
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 CACCCACTTGATCCATCAATCTTCTACTTCCTCGAACATTTCGCTGTTACATCAACCAGA 1682
Query 1644 CCTAGAAACTCACCGGAAAATCTAGCTCTTCGATGCAATAGAAAGCTACTCTTCCACTTA 1703
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1683 CCTAGAAATTCACCGGAAAATCTCTCTCTTCGATGCAATAGAAAGCTACTCTTCCACTTA 1742
Query 1704 GTAGACGAAATCCTCGCCGATATCTTAAAGCCACACATCAATTTGAAACCTTGGGTTTGC 1763
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1743 GTAGACGAAATCCTCGCCGATATCTTAAAGCCACACATAAATTTGAAACCTTGGGTTTGC 1802
Query 1764 CATTACCCGATTCAATCTCAGAGGAATCTAAAGGGATCGGAGCTAATCGACGAGTTATCT 1823
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 CATTACCCGATTCGGTCTCAGAGGAATCTAAAGGGATCGGAGCTAATCGACGAGTTATCT 1862
Query 1824 CGGAGAATCGAGCGGTTTCCGTTAGCAGAA-TGTTTGGTTCTCGAAGACATTGATGCTCT 1882
||||||||||||||||||||||||||| || ||||||||||| ||||| || || |||||
Sbjct 1863 CGGAGAATCGAGCGGTTTCCGTTAGCA-AAGTGTTTGGTTCTAGAAGATATCGACGCTCT 1921
Query 1883 CGTCGCCGGAGATTTCCCGGAGATTGAATCGGCGTTTGAAGAAGACGGCGAAGGAATCGT 1942
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1922 CGTCGCCGGGGACTTCCCGGAGATTGAATCGGCGTTTGAAGAAGACGGCGAAGGAATCGT 1981
Query 1943 CACGGAGATCGAGAGAGGAATCTTGGAAACACTCGTGACTGAAACGACGACGGATTGCTT 2002
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1982 CACGGAGATCGAGAGAGGAATCTTTGAAACACTCGTGACTGAAACGACGACGGATTA-TT 2040
Query 2003 T-GCCACGTGGATGGTCAAAACGGCGCCGCTTAAGCGTAACGATGATGTCAGTGGCACGT 2061
| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 2041 TAGCCACGTGGATGGTCAAAACGGCGCCGCTGAAACGTAACGATGATGTCAGTGGCACGT 2100
Query 2062 GGGGTGTTCACGTGACGAGATACTCTTCAAATGTGGGGTCCCACCACGACTCGTCCTCTT 2121
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 2101 GGGGTGTTCACGTGACGAGATACTCTACAAATGTGGGGTCCCACCACGACTCGTCCTCAT 2160
Query 2122 TGAGATTAAGGCTTCCACGTGGATAAAAGAATTCCACATGGCAGAC 2167
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 TGAGATTAAGGCTTCCACGTGGATAAAAGAATTCCACATGGCAGAC 2206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107479366845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5