BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950989
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62220.1 | Symbols: ATGT18, GT18 | glycosyltransferase 18 | ... 2388 0.0
> AT5G62220.1 | Symbols: ATGT18, GT18 | glycosyltransferase 18
| chr5:24988456-24990009 REVERSE LENGTH=1554
Length=1554
Score = 2388 bits (1293), Expect = 0.0
Identities = 1472/1557 (95%), Gaps = 18/1557 (1%)
Strand=Plus/Plus
Query 21 ATGCTTCCTGTCTCAAATCCTTCCAGTCCTGAACATCTCCTCAAAAAATCCAGAACCCCT 80
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTTCCTGTCTCAAATCCTTCCAGTCCTGAACATCTCCTCAAAAAATCCAGAACCCCA 60
Query 81 GACACCTCCACCGCCATTGATCGGAA-AAGCTCCTTCAACTCGCTAAACTCGGCCGTTAA 139
||| || ||||| |||||||||| || || ||| || |||||||| |||||| || ||
Sbjct 61 GACTCCACCACCTCCATTGATCGTAAGAA-CTCATTTAACTCGCTTCACTCGGTCGGAAA 119
Query 140 CCGCTCGTCCTACATCTCCGCCTCTCGAAGCCACTGCACATGGCTGatcctttctctcct 199
|||||| ||||||||| |||| ||||| ||||||||||||||||||||||| ||||| ||
Sbjct 120 CCGCTCTTCCTACATCGCCGCTTCTCGTAGCCACTGCACATGGCTGATCCTCTCTCTTCT 179
Query 200 ctctctacaactcatcctcttcctcactctccgatccatccctttccctcACCGTCACAT 259
||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 ATCTCTCCAACTGATCCTCTTCCTCACTCTCCGATCCATCCCTTTTCCTCACCGTCACAT 239
Query 260 CCCTGACAACTTCCCTTCTCCCGTCGCCGTCG---CCACCACCGT------CACCGTCAT 310
||| || |||||||||||||||| |||||||| |||||||||| |||||||||
Sbjct 240 CCCCGAAAACTTCCCTTCTCCCGCCGCCGTCGTCACCACCACCGTCACAACCACCGTCAT 299
Query 311 CTCCGCCGcctcctccaat-cccc-ctctc-tcctcctcctcTGACGAACGATGCGATTC 367
|| |||||||| |||||| |||| ||||| |||||||| ||||||||||||||||||||
Sbjct 300 TTCTGCCGCCTCTTCCAATCCCCCTCTCTCATCCTCCTCATCTGACGAACGATGCGATTC 359
Query 368 AGGTCGAGTCTTCGTCTACGACATGCCAAAGATCTTCAACGAAGTGATTCTACAACAGTG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGGTCGAGTCTTCGTCTACGACATGCCAAAGATCTTCAACGAAGTGATTCTACAACAGTG 419
Query 428 TGATAATCTCAATCCATGGAGCTCTCGCTGCGACGCCCTTTCGAACGACGGATTTGGTCA 487
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 420 TGATAATCTCAATCCATGGAGCTCTCGCTGCGACGCACTTTCTAACGACGGGTTTGGTCA 479
Query 488 AGAAGCGACGTCGTTGAGCAACGTGATCCCTAAAGATTTGGTTCAATCATGGTTTTGGAC 547
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGAAGCGACGTCGTTAAGCAACGTGATCCCTAAAGATTTGGTTCAATCATGGTTTTGGAC 539
Query 548 TGATCAATTCGTAACCGAAATCATTTTCCATAACCGGATTTTAAACCACCGGTGTCGGAC 607
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGACCAATTCGTAACCGAAATTATTTTCCATAACCGGATTTTAAACCACCGGTGTCGGAC 599
Query 608 TTTGGATCCGGAATCAGCTACGGCTTTTTATATCCCGTTCTACGCTGGGCTCGCGGTTGG 667
|||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||
Sbjct 600 TTTGGATCCGGAATCAGCTACGGCGTTTTATATACCGTTCTACGCTGGACTCGCAGTTGG 659
Query 668 TCAATATTTATGGTCCAATTACGCAGCGGCTGATCGTGACCGTCATTGTAAAATGATGAC 727
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 TCAATATTTATGGTCAAATTACGCAGCGGCTGATCGTGACCGTCATTGTAAGATGATGAC 719
Query 728 ACAGTGGGTCAAAGATCAACCTTATTGGAATAGATCCAACGGTTGGGATCATTTTATTAC 787
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 ACAGTGGGTCAAAAATCAACCTTATTGGAATAGATCCAACGGTTGGGATCATTTCATTAC 779
Query 788 CATGGGACGCATTACATGGGATTTTCGCAGGTCTAAAGACGAAGATTGGGGATCTAACTG 847
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TATGGGACGCATCACATGGGATTTTCGCAGGTCTAAAGACGAAGATTGGGGATCTAACTG 839
Query 848 TATTTATATCCCCGGTATGCGTAACATCACGCGCCTCCTTATTGAGCGTAACTCTTGGGA 907
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TATTTATATCCCTGGTATGCGTAACATCACGCGCCTCCTTATTGAGCGTAACTCTTGGGA 899
Query 908 CCATTTTGACGTCGGTGTACCATACCCTACCGGATTCCACCCTAGAACGGACTCCGACGT 967
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 900 TCATTTTGACGTCGGTGTACCGTACCCTACCGGATTCCACCCTAGATCGGACTCCGACGT 959
Query 968 CGTGAATTGGCAAGATTTTGTTCGGAATCGCCGTCGTGAAACGTTGTTCTGTTTCGCCGG 1027
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 960 CGTGAATTGGCAAGATTTTGTTCGGAATCGACGTCGTGAGACGTTGTTCTGTTTCGCTGG 1019
Query 1028 AGCTCCACGCGCTGGGATTGTGAATGATTTCAGAGGATTGCTTCTCCGTCACTGTGAGGA 1087
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1020 AGCTCCACGCGCCGGGATTGTGAATGATTTTAGAGGATTGCTTCTCCGTCACTGTGAGGA 1079
Query 1088 GTCACGTGGGAAGTGTCGGACGGTGGATTGTACCGTCGGGAAATGCTCGAATGGTTCGTC 1147
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATCGCGTGGGAAGTGTCGGACGGTGGATTGTACCGTCGGGAAATGCTCGAATGGTTCGTC 1139
Query 1148 GGCGATTTTGGAGACGTTTCTCGGGTCTGATTTTTGTCTCCAGCCTCGAGGAGATAGCTT 1207
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 GGCGATTTTGGAGACGTTTCTCGGGTCTGATTTTTGTCTCCAGCCACGAGGAGATAGCTT 1199
Query 1208 CACTCGCCGGTCGATTTTTGATTGTATGTTGGCCGGTTCGATTCCGGTTTTCTTTTGGAG 1267
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CACACGCCGGTCGATATTTGATTGTATGTTGGCCGGTTCGATTCCGGTTTTCTTTTGGAG 1259
Query 1268 ACGAAGCGCTTACATGCAGTATCAGTGGTTTTTACCGGATAAACCAGATAGTTACTCGGT 1327
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1260 ACGAAGCGCTTACATGCAGTATCAGTGGTTTTTACCGGATAAACCGGATAGTTATTCGGT 1319
Query 1328 TTTTATAGACCGGAATG-GGATTAA-AAACGGCACGACGTCTATAAAGGAAGTGTTGGGA 1385
||||||||||||||| | || | || |||||||||||||||||||||||||||||||| |
Sbjct 1320 TTTTATAGACCGGAACGAGG-T-AACAAACGGCACGACGTCTATAAAGGAAGTGTTGGAA 1377
Query 1386 CGGTATAGCAAAGAAGATGTGAGGAAGATGAGAGAAAGAGTGATTGATTTGATACCGAAT 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CGGTATAGCAAAGAAGATGTGAGGAAGATGAGAGAAAGAGTGATTGATTTGATACCGAAT 1437
Query 1446 TTGGTTTACGCAAAGTCTCCGAATGGGTTAGAGACTTTCAAAGACGCCTTCGATGTGGCG 1505
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1438 TTGGTTTACGCTAAGTCTCCGAATGGGTTAGAGACTTTCAAAGACGCTTTTGATGTGGCG 1497
Query 1506 ATAGATGGAGTTTTTAGGAGATTCAAGGAGCAAGAGAATTGGTACAAATGGAGATGA 1562
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1498 ATAGATGGAGTTTTTAGGAGATTCAAGGAGCAAGAGAAATGGTACAAATGGAGATGA 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78162248565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5