BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950998
Length=416
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45030.1 | Symbols: | Ribosomal protein S10p/S20e family pr... 577 3e-164
AT5G62300.1 | Symbols: | Ribosomal protein S10p/S20e family pr... 531 3e-150
> AT3G45030.1 | Symbols: | Ribosomal protein S10p/S20e family
protein | chr3:16471386-16472393 REVERSE LENGTH=676
Length=676
Score = 577 bits (312), Expect = 3e-164
Identities = 359/382 (94%), Gaps = 2/382 (1%)
Strand=Plus/Plus
Query 18 AAATATGACGAC-GTATCAACAACCAATGAAACCAGGAAAGGCTGGTTTGGAAGAGCCAC 76
||||||| |||| | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 78 AAATATGGCGACAGCGT-ATCAACCAATGAAACCAGGAAAGGCTGGTTTGGAAGAGCCAC 136
Query 77 TCGAGCAGATTCATAAGATCAGGATTACTCTATCCTCCAAGAATGTCAAGAACCTCGAGA 136
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 137 TCGAGCAGATTCACAAGATCAGGATTACTCTCTCCTCCAAGAATGTCAAGAACCTTGAGA 196
Query 137 AAGTGTGCACTGACTTGGTTCGTGGAGCCAAGGACAAGAGACTTAGAGTCAAGGGTCCAG 196
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 197 AAGTGTGCACTGATTTGGTTCGTGGAGCTAAGGACAAGAGACTTAGAGTCAAGGGACCAG 256
Query 197 TGAGAATGCCCACCAAGGTTCTTAAGATCACCACCCGAAAAGCTCCTTGTGGTGAAGGAA 256
||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 257 TGAGAATGCCCACTAAGGTTCTCAAGATCACTACCCGAAAAGCTCCCTGTGGTGAAGGAA 316
Query 257 CTAATACATGGGACAGATTCGAGCTTAGGGTACACAAGCGAGTGATTGATCTCTTCAGCT 316
| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 317 CCAATACATGGGACAGATTTGAACTTAGGGTGCACAAGCGAGTGATTGATCTCTTCAGCT 376
Query 317 CTCCTGATGTGGTCAAGCAAATCACATCCATCACCATTGAACCTGGTGTTGAGGTCGAGG 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 377 CTCCTGATGTGGTCAAGCAAATCACATCCATCACCATTGAACCTGGTGTTGAGGTTGAGG 436
Query 377 TCACCATCGCCGATTCTTAGAT 398
||||||||||||| || |||||
Sbjct 437 TCACCATCGCCGACTCGTAGAT 458
> AT5G62300.1 | Symbols: | Ribosomal protein S10p/S20e family
protein | chr5:25021200-25022436 REVERSE LENGTH=658
Length=658
Score = 531 bits (287), Expect = 3e-150
Identities = 361/397 (91%), Gaps = 3/397 (1%)
Strand=Plus/Plus
Query 3 TCAGAAGAAGCTGAAAAATATGACGAC-GTATCAACAACCAATGAAACCAGGAAAGGCTG 61
||||||||||||| ||||||| |||| | | | ||||||||||||||||| |||||||
Sbjct 78 TCAGAAGAAGCTG-CAAATATGGCGACAGCGT-ATCAACCAATGAAACCAGGGAAGGCTG 135
Query 62 GTTTGGAAGAGCCACTCGAGCAGATTCATAAGATCAGGATTACTCTATCCTCCAAGAATG 121
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 136 GTTTGGAAGAGCCACTCGAGCAGATTCACAAGATCAGAATTACTCTCTCCTCCAAGAATG 195
Query 122 TCAAGAACCTCGAGAAAGTGTGCACTGACTTGGTTCGTGGAGCCAAGGACAAGAGACTTA 181
|||||||| | || |||||||| ||||| |||||||||||||| |||||||||||||| |
Sbjct 196 TCAAGAACTTGGAAAAAGTGTGTACTGATTTGGTTCGTGGAGCTAAGGACAAGAGACTGA 255
Query 182 GAGTCAAGGGTCCAGTGAGAATGCCCACCAAGGTTCTTAAGATCACCACCCGAAAAGCTC 241
|||| ||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 256 GAGTTAAGGGTCCAGTCAGAATGCCCACCAAGGTTCTCAAGATCACTACCCGTAAAGCTC 315
Query 242 CTTGTGGTGAAGGAACTAATACATGGGACAGATTCGAGCTTAGGGTACACAAGCGAGTGA 301
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 316 CTTGTGGTGAAGGAACCAACACATGGGACAGATTCGAGCTTAGGGTACACAAGCGAGTTA 375
Query 302 TTGATCTCTTCAGCTCTCCTGATGTGGTCAAGCAAATCACATCCATCACCATTGAACCTG 361
| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 376 TAGATCTTTTCAGCTCTCCTGATGTGGTCAAGCAGATCACCTCCATCACCATTGAACCTG 435
Query 362 GTGTTGAGGTCGAGGTCACCATCGCCGATTCTTAGAT 398
||||||| || |||||||||||||| || || |||||
Sbjct 436 GTGTTGAAGTTGAGGTCACCATCGCTGACTCGTAGAT 472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19704957608
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5