BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951000
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62320.1 | Symbols: MYB99, ATMYBCU15, ATMYB99 | myb domain p... 1147 0.0
> AT5G62320.1 | Symbols: MYB99, ATMYBCU15, ATMYB99 | myb domain
protein 99 | chr5:25028716-25029933 REVERSE LENGTH=1054
Length=1054
Score = 1147 bits (621), Expect = 0.0
Identities = 730/782 (93%), Gaps = 9/782 (1%)
Strand=Plus/Plus
Query 1 TTTTTAAACC--AT-ATATAAATTATGGGTGGTCGTAAACCATGTTGTGACGAAGTTGGA 57
|||||||||| || |||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 124 TTTTTAAACCATATAATATAAATAATGGGTGGTCGTAAACCATGTTGTGATGAGGTTGGA 183
Query 58 GTAAGAAAGGGACCGTGGACAGTGGAAGAAGATGGGAAACTAGTTGATTTCTTAAGGACA 117
|||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 184 TTAAGAAAGGGTCCATGGACAGTGGAAGAAGATGGGAAACTAGTTGATTTCTTAAGGGCA 243
Query 118 CGTGGCAACTGCGGCGGTGGCGGAGGAGGATGGTGCTGGAGAGACGTGCCGAAACTGGCG 177
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 244 CGTGGCAACTGCGGTGGTGGTGGAGGAGGATGGTGCTGGAGAGACGTGCCAAAACTGGCG 303
Query 178 GGGCTAAGGCGGTGTGGCAAAAGTTGCCGTCTCCGATGGACTAATTATCTCCGGCCAGAT 237
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 304 GGGCTAAGGAGGTGTGGCAAAAGTTGCCGTCTCCGGTGGACTAATTATCTCCGGCCAGAT 363
Query 238 CTCAAGAGAGGTCTTTTTAGTGAAGAGGAAATCCAACTAGTCATTGATCTTCATGCTCGC 297
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 364 CTCAAGAGAGGTCTTTTTACTGAAGAAGAAATCCAACTAGTCATTGATCTTCATGCTCGC 423
Query 298 CTTGGCAATAGATGGTCGAAGATTGCAGTGGAGTTACCGGGAAGAACAGACAACGATATC 357
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 424 CTTGGCAATAGATGGTCGAAGATTGCAGTGGAGTTACCAGGAAGAACAGACAACGATATC 483
Query 358 AAAAATTATTGGAACACTCATATAAAGAGGAAGCTTATAAGAATGGGTATTGATCCAAAC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 AAAAATTATTGGAACACTCATATAAAGAGGAAGCTTATAAGAATGGGTATTGATCCAAAC 543
Query 418 ACACATCGTCGGTTTGACCAACTAAAAGTCAACGAAGATAAAAAGGTATTGGTCAACGAT 477
||||||||||| |||||||||| |||||||||||| || ||| | ||||||||||||||
Sbjct 544 ACACATCGTCGATTTGACCAACAAAAAGTCAACGAGGAGGAAACGATATTGGTCAACGAT 603
Query 478 CTAAAGCCTCTGCCTGAG-CCAGAGGTACCGGTAGTCTT-GAAGAATGACACGTCGGCGG 535
| |||||||||| ||||| || |||||| | || | ||| ||||||||||||||| || |
Sbjct 604 CCAAAGCCTCTGTCTGAGACC-GAGGTATCTGTTG-CTTTGAAGAATGACACGTCAGCAG 661
Query 536 TGTTATCAGGAAATCTAAACCAGTTAGCTGACGTAGACGGTGATGATCAGCCGTGGAGCT 595
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 662 TGTTATCAGGAAATCTAAACCAATTGGCTGACGTGGACGGTGATGATCAGCCGTGGAGCT 721
Query 596 TTTTAATGGAAAATGACGGAG-AGGGAGGTGGTGGCGCCGCCGGAGAGCTTATGATGCTA 654
|| ||||||||||||||| || ||| |||||| | ||||||||||||||||| |||||||
Sbjct 722 TTCTAATGGAAAATGACGAAGGAGG-AGGTGGCGACGCCGCCGGAGAGCTTACGATGCTA 780
Query 655 TTGTCCGGCGACATTACGTCATCATGTTCTTCTTCGTCATCTTTGTGGTTGAAGTATGGA 714
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 781 TTGTCCGGTGACATTACGTCATCATGTTCTTCTTCGTCATCTTTGTGGATGAAGTATGGA 840
Query 715 GATTTGGGATACGAAGATTTAGAACTTGGATGTTTCGATGATTAGAGATTCAAGTATGCT 774
|| || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 841 GAATTCGGATACGAAGATTTAGAACTTGGATGTTTCGATGTTTAGAGATTCAAGTATGTT 900
Query 775 TA 776
||
Sbjct 901 TA 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37876546838
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5