BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951004
Length=665
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62340.1 | Symbols: | Plant invertase/pectin methylesterase... 754 0.0
AT5G62330.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 451 3e-126
> AT5G62340.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr5:25033518-25034404 FORWARD
LENGTH=887
Length=887
Score = 754 bits (408), Expect = 0.0
Identities = 592/678 (87%), Gaps = 23/678 (3%)
Strand=Plus/Plus
Query 1 TTCTCTCAACCTCAAGAAAAACAGCAATGGCAAAACAATACCAAGCTCTCTTTCTACTCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TTCTCTCAACCTCAAGAAAAACAGCAATGGCAAAACAATACCAAGCTCTCTTTCTACTCT 118
Query 61 TCTCCGTCT-CTTACCTCCTCTTTTCGGAGCTCACGACCGCTTCAGTCAGCCCGACCGGA 119
||||||||| || ||||| ||| |||| |||||||||||| |||||| |||| |||||
Sbjct 119 TCTCCGTCTTCT-ACCTCTTCTCGTCGGTGCTCACGACCGCCACAGTCAACCCGGCCGGA 177
Query 120 ACTTCTACGAAAGCACTAAACTTCATTCAATCCTCTTGCAAATTCACAACGTACCAATCC 179
||| | || |||||||||||||| ||||||||||| ||||||| |||||| |||||||||
Sbjct 178 ACTACCACAAAAGCACTAAACTTTATTCAATCCTCATGCAAATCCACAACATACCAATCC 237
Query 180 CTGTGCGTTGAGACTCTCTCGGTCTACGCCAGTACGATCCAAACAAGCCCTCGACGTCTC 239
||||||||||| ||||||||||| ||||||| ||||||| ||||||||||||||| |||
Sbjct 238 CTGTGCGTTGAAACTCTCTCGGTTTACGCCAATACGATCAAAACAAGCCCTCGACACCTC 297
Query 240 GTGGATGCAGCTATTGCCGTTAGTCTGAACCAAGCGCTGTCTACGAAGCTCTTCCTCTCA 299
||||||||||||| |||| |||||||||||||||||||| |||||||||||| |||||
Sbjct 298 TTGGATGCAGCTATCACCGTGAGTCTGAACCAAGCGCTGTCCACGAAGCTCTTCATCTCA 357
Query 300 CACCTGACGAAGAACCAGTTCCGAACCCTTGC-GGACTGC-CAACCAACAACCGA-ATCG 356
||||||| ||||| |||||||| || |||| | ||||||| || ||| | ||||| | ||
Sbjct 358 CACCTGAGGAAGAGCCAGTTCCAAATCCTT-CAGGACTGCGCA-CCATCGACCGATA-CG 414
Query 357 TACACTACAGATTGCGAGTGTTCTGTCCAA-CAACTCCAAGAGGTGGTGATTTGTAAAAG 415
| || ||||||||||||||||||||||||| || |||||||||||||||| |||||| ||
Sbjct 415 TTCAGTACAGATTGCGAGTGTTCTGTCCAAGCA-CTCCAAGAGGTGGTGAATTGTAACAG 473
Query 416 TTGGACCGAATGCTTGTTTCACGTTAACAATGCTGAAGTCTGTGCCATTTCGGCTGAGGA 475
||||||||| |||||||||||||| || ||||||||||| ||||||||||||| |||| |
Sbjct 474 TTGGACCGACTGCTTGTTTCACGTAAAGAATGCTGAAGTGTGTGCCATTTCGGGTGAG-A 532
Query 476 GT-ATAGCGTCGAGAATTCTTGCTCCAACCCATTCACGGGTCCGGTAAAGATGTCAGTCC 534
|| ||||||||||||| ||||||||| ||| ||| ||| ||||| |||||| |||| ||
Sbjct 533 GTCATAGCGTCGAGAACACTTGCTCCAGCCCGTTCGCGGATCCGGGAAAGATATCAG-CC 591
Query 535 -GGGGCCGAATCTCGGATGC-GATAAGAAAGTCACTCCATACCCAGTT-TACTAAGTTGC 591
||||||| ||||||||||| | ||||||| ||||| ||||||| ||| | |||||||||
Sbjct 592 AGGGGCCGGATCTCGGATGCCG-TAAGAAAATCACTTCATACCCGGTTCT-CTAAGTTGC 649
Query 592 ACCATGAAATAAACAATGTCAAAATGTTGTTCAAAGCCTTTCCTAAGAA---TTAGAAAT 648
||| ||||||||||||| ||||||||||||| | ||||||||||| || |||| |||
Sbjct 650 GCCAGGAAATAAACAATGCCAAAATGTTGTTCGAGGCCTTTCCTAATAAGCATTAGTAAT 709
Query 649 AAT-TGACTTCTTTTGTT 665
||| | | ||||||||||
Sbjct 710 AATAT-ATTTCTTTTGTT 726
> AT5G62330.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Plant invertase/pectin methylesterase inhibitor superfamily
protein (TAIR:AT5G62340.1); Has 9 Blast hits to 9 proteins
in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr5:25031601-25032204 FORWARD LENGTH=513
Length=513
Score = 451 bits (244), Expect = 3e-126
Identities = 327/367 (89%), Gaps = 6/367 (2%)
Strand=Plus/Plus
Query 42 CAAGCTCTCTTTCTACTCCTCTCCGTCTCTTACCTCCTCTTTTCGGAGCTCACGACCGCT 101
||||||||||||||||||||||||||||| |||||| ||| || || |||||| | ||
Sbjct 5 CAAGCTCTCTTTCTACTCCTCTCCGTCTCCTACCTCTTCTCCTCAGACCTCACGGCTGCC 64
Query 102 TCAGTCAGCC-CGACCGGAACTTCTACGAAAGCACTAAACTTCATTCAATCCTCTTGCAA 160
| |||| || || ||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 65 ACCGTCA-CCGCGGCCGGAACTTCTACAAAAGCACTAAACTTCATTCAATCTTCTTGCAA 123
Query 161 A-TTCACAACGTACCAATCCCTGTGCGTTGAGACTCTCTCGGTCTACGCCAGTACGATCC 219
| || ||||||||||||||||||||||| || || |||||||||||||| | ||||||||
Sbjct 124 AGTT-ACAACGTACCAATCCCTGTGCGTGGACACGCTCTCGGTCTACGCAAATACGATCC 182
Query 220 AAACAAGCCCTCGACGTCTCGTGGATGCAGCTATTGCCGTTAGTCTGAACCAAGCGCTGT 279
|||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 183 AAACAAGCCCTCGACGCCTCGTGGATGCAGCTATCGCCGTGAGTCTGAAACAAGCGCTGT 242
Query 280 CTACGAAGCTCTTCCTCTCACACCTGACGAAGAACCAGTTCCGAACCCTTGCGGACTGCC 339
| |||||||||||| |||||||||||| ||||| |||||||| ||||||||| |||||||
Sbjct 243 CCACGAAGCTCTTCATCTCACACCTGAGGAAGAGCCAGTTCCAAACCCTTGCAGACTGCC 302
Query 340 AACCAACAACCGAATCGTACACTACAGATTGCG-AGTGTTCTGTCCAACAACTCCAAGAG 398
||||||||||||| | |||||||||||| ||| ||||||||||| || |||||||||||
Sbjct 303 GACCAACAACCGAAACATACACTACAGAT-GCGCAGTGTTCTGTCGAAGAACTCCAAGAG 361
Query 399 GTGGTGA 405
|||||||
Sbjct 362 GTGGTGA 368
Score = 191 bits (103), Expect = 8e-48
Identities = 129/142 (91%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 503 CCCATTCACGGGTCCGGTAAAGATGTCAGTCCGGGGCCGAATCTCGGATGCGATAAGAAA 562
||| ||| ||| ||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 372 CCCGTTCGCGGATCCGGTAAAGATGTCAGTCCGGGGCGGAGTCTCGGATGCGGTAAGAAA 431
Query 563 GTCACTCCATACCCAGTTTACTAAGTTGCACCATGAAATAAACAATGTCAAAATGTTGTT 622
|||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 432 GTCACTTCATACCCAGTTCGCTAAGTTGCACCATGAAATAAACAATGTCAAGATGTTGTT 491
Query 623 CAAAGCCTTTCCTAAGAATTAG 644
|| ||| ||| |||||||||||
Sbjct 492 CATAGCTTTTGCTAAGAATTAG 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32149854080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5